BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939817
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04200.1 | Symbols: AtMC9, MC9 | metacaspase 9 | chr5:115379... 1541 0.0
> AT5G04200.1 | Symbols: AtMC9, MC9 | metacaspase 9 | chr5:1153790-1155040
FORWARD LENGTH=1251
Length=1251
Score = 1541 bits (834), Expect = 0.0
Identities = 939/990 (95%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 4 AAACCTTAAGAAATCAAAT---G-AACACAAAGGATCAACAAGGGATGGCCAAGAAAAGA 59
|||||||||||||||| || | ||| ||| ||||||||||||||||| ||||||||||
Sbjct 74 AAACCTTAAGAAATCATATCCAGAAACTCAATGGATCAACAAGGGATGGTCAAGAAAAGA 133
Query 60 CTCGCCGTTCTCGTCGGGTGCAACTACCCTAACACAAGGAACGAGCTTCACGGTTGCATC 119
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CTAGCCGTTCTCGTCGGCTGCAACTACCCTAACACAAGGAACGAGCTTCACGGTTGCATC 193
Query 120 AATGATGTTTTAGCCATGAAAGAAACTATTATGTCCCGTTTCGGATTCAAAGAAGAGGAC 179
||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||| |||
Sbjct 194 AATGATGTTCTAGCCATGAAAGAAACTATTTTGTCACGTTTCGGATTCAAACAAGACGAC 253
Query 180 ATTGAGGTGCTAACGGACGAGCCAGAATCAAAGGTAAAGCCGACAGGTGCCAACATCAAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ATTGAGGTGCTAACGGACGAGCCAGAATCAAAGGTAAAGCCGACAGGTGCCAACATCAAG 313
Query 240 GCTTCTCTACGTAGGATGGTGGGTAAAGCTCAAGCCGGATCTGGAGACATCTTGTTCTTC 299
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 314 GCTGCTCTACGTAGGATGGTGGATAAAGCTCAAGCCGGATCTGGAGACATCTTGTTCTTC 373
Query 300 CACTACAGTGGCCATGGAACTCGTATTCCTTCGGTTAAATCTGCTCATCCTTTTAAGCAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 374 CACTACAGTGGCCATGGAACTCGTATTCCTTCGGTTAAATCTGCTCATCCTTTTAAACAA 433
Query 360 GACGAAGCTATTGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTCAGAGAATTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 434 GACGAAGCTATTGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTCCGAGAATTG 493
Query 420 GTCAATCAACTTCCTAAAGGAACAAGCTTTACCATGATCTCTGATTCTTGCCATAGTGGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GTCAATCAACTTCCTAAAGGAACAAGCTTTACCATGATCTCTGATTCTTGCCATAGTGGT 553
Query 480 GGTCTCATCGACAAGGAGAAAGAACAGATCGGACCCTTTTCAGTCTCCAGCAACATATCT 539
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 554 GGTCTCATCGACAAGGAGAAAGAACAGATCGGACCCTCTTCGGTCTCCAGCAACATATCT 613
Query 540 CCGGAC-ATGGAGACAACGAATAAGACAATAACTTCACGTGCCTTACCCTTCAAGGAAGT 598
|||| | || ||||||||||| ||||| ||||| ||||||||||| |||||||||| |||
Sbjct 614 CCGG-CTATTGAGACAACGAACAAGACTATAACATCACGTGCCTTGCCCTTCAAGGCAGT 672
Query 599 TCTTGACCACTTGAGTTCTCTCACGGGAATAACAACTTCCGACATCGGCACACACCTACT 658
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 673 CCTTGACCACTTGAGTTCTCTCACCGGAATTACAACTTCCGACATCGGCACACATCTACT 732
Query 659 TGAGCTCTTTGGCGGCGATGCTGGCCTTAAATTCCGGTTACCTGCGATGGATCTAATGGA 718
||||||||||||| |||||||||| ||||| || |||||||| || ||||||||||||||
Sbjct 733 TGAGCTCTTTGGCCGCGATGCTGGTCTTAAGTTTCGGTTACCGGCAATGGATCTAATGGA 792
Query 719 TCTTTTGGAGACTATGACGGCCCGTGAAAGACACGTGGATTCTGGGATATTGCTGAGCGG 778
||||||||||||||||||||||||||||| ||||||||| || ||||||||| |||||||
Sbjct 793 TCTTTTGGAGACTATGACGGCCCGTGAAAAACACGTGGACTCAGGGATATTGATGAGCGG 852
Query 779 GTGTCAGGCGGATGAGACGTCTGCTGACGTCGGCGTTGGCAATGGGAAAGCGTACGGAGC 838
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 853 GTGTCAGGCGGATGAGACGTCTGCTGACGTCGGCGTTGGGAACGGGAAAGCGTACGGAGC 912
Query 839 GTTTAGCAACGCGATTCAGAGGGTGTTGAAAGAAAAAGAAGGTGCCTTGAAGAACAAGCA 898
|||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 913 GTTTAGCAACGCGATTCAAAGGGTGTTGAACGAAAATGAAGGTGCCATGAAGAACAAGCA 972
Query 899 ACTAGTGATGATGGCAAGGGATGTGCTTGAGAGACTAGGGTTTCATCAACACCCTTGTCT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 ACTAGTGATGATGGCAAGGGATGTGCTTGAGAGACTAGGGTTTCATCAACACCCTTGTCT 1032
Query 959 CTACTGCAGCGACCAGAACGCGGAGGCGAC 988
||||||||||||||||||||| || |||||
Sbjct 1033 CTACTGCAGCGACCAGAACGCAGACGCGAC 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5