BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939824
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04270.1 | Symbols: | DHHC-type zinc finger family protein ... 1284 0.0
> AT5G04270.1 | Symbols: | DHHC-type zinc finger family protein
| chr5:1182718-1184765 REVERSE LENGTH=990
Length=990
Score = 1284 bits (695), Expect = 0.0
Identities = 766/800 (96%), Gaps = 5/800 (1%)
Strand=Plus/Plus
Query 1 TCCTTTCGGTGATTCTGGTGATGGGTTTCGTGTACTACGTCACACTCTTCGTTTTCATTG 60
|||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||| |
Sbjct 28 TCCTTTTGGTGATTCTGGTGATGGGTTTCGTGTATTACGTCACACTGTTTGTTTTCATCG 87
Query 61 ATGATTGGGTTGGTTTACAAAGCTCAGCTGGGAAATTAAACGCCTTCCTCTTCAGCTTCT 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 88 ATGATTGGGTTGGTTTACAAAGCTCAGCTGGGAAATTAAACGCCTTACTCTTCAGCTTAT 147
Query 121 TGGCATCCCTCTGTCTATTCTCGCTCTCGATTTGCGTTCTTGTAGATCCAGGTCGTGTTC 180
|||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 148 TGGCGTCTCTCTGTCTCTTCTCGCTCTCAATTTGCGTTCTTGTAGATCCAGGTCGTGTTC 207
Query 181 CAGCATCTTATGCTCCTGATGTCGAGGACTCTGGCTGGTCCAATGGTAACGCTACAGAAA 240
| |||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||
Sbjct 208 CTGCATCTTATGCTCCTGATGTTGAGGACTCTGGCTGGTCCAATAGTAACGTTACAGAAA 267
Query 241 CAAGGAAATGTGATAAGTGCTTTGCATATAAACCTCTTCGGACTCACCATTGCCGAGTTT 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 268 CAAGGAAATGTGATAAGTGCTTTGCATATAAGCCTCTTCGGACTCACCATTGCCGGGTTT 327
Query 301 GCAGAAGATGCGTCTTGAAGATGGACCACCATTGCCTTTGGATAAATAACTGTGTTGGTT 360
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 328 GCAGAAGATGCGTCTTGAAGATGGACCATCATTGCCTCTGGATAAATAACTGTGTTGGTT 387
Query 361 ATGCAAACTATAAGGCTTTCTTCATTCTTGTGTTTTATGCAACTGTGGCTTCCATCTACT 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 388 ATGCAAACTATAAGGCTTTCTTCATTCTTGTGTTTTATGCAACCGTGGCTTCCATCTACT 447
Query 421 CTACAGTGTTGCTGGTTTGCTGTGCATTCAAGAACGGAGATTCCTATGCGGGAAATGTTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 CTACAGTGTTGCTGGTTTGCTGTGCATTCAAGAACGGAGATTCCTATGCGGGAAATGTTC 507
Query 481 CACTCAAAACTTTCATTGTTTCTTGTGGGATCTTCATGATCGGACTAAGCATAACACTTG 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 CGCTCAAAACTTTCATTGTTTCTTGTGGGATCTTCATGATCGGACTAAGCATAACACTTG 567
Query 541 GGACTCTCCTTTGTTGGCATATCTACCTCATCGCACACAATATGACCACCATTGAGCATT 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 568 GGACTCTCCTTTGTTGGCATATCTACCTCATCACACACAATATGACCACCATTGAGCATT 627
Query 601 ATGATTCAAAGCGGGCCTCGTGGTTAGCTAGAAAATCAGGACAAAGCTTTAGGCATCAAT 660
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 628 ATGATTCAAAGCGGGCCTCATGGTTAGCTAGAAAATCAGGACAAAGCTATAGGCATCAAT 687
Query 661 TCGATATTGG-TGTTTACAAAAACATCACCTCGGTGTTAGGCCCTAACATGATCAAATGG 719
||||| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 688 TCGATGTTGGCT-TTTACAAAAACCTCACCTCGGTGTTAGGCCCTAACATGATCAAATGG 746
Query 720 CTATGCCCCACATTTACTGGGAATCCTGAAGACGGTATTAGCTTCTCTGCATCGAGAGAT 779
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 747 CTATGCCCCACATTTACTAGGAATCCTGAAGACGGTATTAGCTTTTCTGCATCGAGAGAC 806
Query 780 AGCTAGCTTAAAA-ATTTCA 798
||||||| |||| ||||||
Sbjct 807 AGCTAGC--AAAATATTTCA 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5