BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939830
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04340.1 | Symbols: C2H2, CZF2, ZAT6 | zinc finger of Arabid... 1099 0.0
> AT5G04340.1 | Symbols: C2H2, CZF2, ZAT6 | zinc finger of Arabidopsis
thaliana 6 | chr5:1216131-1217106 REVERSE LENGTH=976
Length=976
Score = 1099 bits (595), Expect = 0.0
Identities = 694/741 (94%), Gaps = 10/741 (1%)
Strand=Plus/Plus
Query 15 AAGATAATGGCACTTGAAGCTCTTAGTTCTCCAAGATTAGCTTCTCCGATGCCGACTCTG 74
|||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 64 AAGATAATGGCACTTGAAACTCTTACTTCTCCAAGATTATCTTCTCCGATGCCGACTCTG 123
Query 75 TTTCAAGATTCAGCACTAGGGTTTCATGGGAGCAAAGGCAAACGATCTAAGCGATCAAGA 134
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 124 TTTCAAGATTCAGCACTAGGGTTTCATGGAAGCAAAGGCAAACGATCTAAGCGATCAAGA 183
Query 135 TCTGAATTCGACCGTCAGAGTCTAACGGAGGATGAATATATCGCTTTGTGTCTCATGCTT 194
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 184 TCTGAATTCGACCGTCAGAGTCTCACGGAGGATGAATATATCGCTTTATGTCTCATGCTT 243
Query 195 CTTGCTCGCGACGGAGATCGAACCCGTGAccttgacctgcctccttcttcttcttcacct 254
|||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||
Sbjct 244 CTTGCTCGCGACGGAGATAGAAACCGTGACCTTGACCTGCCTTCTTCTTCGTCTTCACCT 303
Query 255 cctctgcttcctcctcttccttctccGATCTACAAGTGTAGCGTCTGTGACAAGGCGTTT 314
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 CCTCTGCTTCCTCCTCTTCCTACTCCGATCTACAAGTGTAGCGTCTGTGACAAGGCGTTT 363
Query 315 TCTTCTTACCAGGCTCTCGGTGGACACAAGGCAAGCCACCGGAAAAGCTTTTCGCTAACT 374
|| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 364 TCGTCTTACCAGGCTCTTGGTGGACACAAGGCAAGTCACCGGAAAAGCTTTTCGCTTACT 423
Query 375 CAATCAGCCGGAGGAGGAGGAGATGAGCCATCGACGTCGTCGGCGATAACCATGTCTGGT 434
||||| ||| ||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 424 CAATCTGCC------GGAGGAGATGAGCTGTCGACATCGTCGGCGATAACCACGTCTGGT 477
Query 435 ATCTCCGGTGG-GGGAGGAGGAAGTGTGAAGTCGCACGTTTGCTCCATCTGTCATAAATC 493
|| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 ATATCCGGTGGCGGG-GGAGGAAGTGTGAAGTCGCACGTTTGCTCTATCTGTCATAAATC 536
Query 494 GTTCGCCACCGGTCAAGCTCTGGGCGGTCACAAACGGTGCCACTACGAAGGTAAA-AGCG 552
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| | ||
Sbjct 537 GTTCGCCACCGGTCAAGCTCTCGGCGGCCACAAACGGTGCCACTACGAAGG-AAAGAACG 595
Query 553 GCGGCGGCGGGAGCAGTAGCGTGTCGAATTCTGAAGGTGTAGGGTCCACAAGCCACGTCA 612
| ||||| | ||| |||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 596 GAGGCGGTGTGAGTAGTAGCGTGTCGAATTCTGAAGATGTGGGGTCTACAAGCCACGTCA 655
Query 613 GTAGCGGCCACCGTGGGTTTGACCTCAACATACCGCCGATACCGGAATTCTCGATGGTCA 672
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCAGTGGCCACCGTGGGTTTGACCTCAACATACCGCCGATACCGGAATTCTCGATGGTCA 715
Query 673 ACGGAGACGAAGAGGTGATGAGTCCCATGCCGGTGAAGAAACTCCGGTTTGACTTCCCGG 732
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 716 ACGGAGACGAAGAGGTGATGAGTCCTATGCCGGCGAAGAAACTCCGGTTTGACTTCCCGG 775
Query 733 AGAAACCCTAAACATATACCT 753
|||||||||||||||| ||||
Sbjct 776 AGAAACCCTAAACATAAACCT 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5