BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939832

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04347.1 | Symbols:  | Plant self-incompatibility protein S1...   619    6e-177


> AT5G04347.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr5:1219828-1220612 FORWARD LENGTH=785
Length=785

 Score =  619 bits (335),  Expect = 6e-177
 Identities = 395/423 (93%), Gaps = 8/423 (2%)
 Strand=Plus/Plus

Query  15   AACAATATGAAGAATCTCTTCATCTTCTTGATTCTTCTTAGTGTATGCATCGGAAATACA  74
            |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct  44   AACAATATGAAGAATCTCTTTATCTTCGTGATTCTTCTTAGTGTATGCATCAGAAATACA  103

Query  75   ATCGGAATAAGTACACTCTTGGTCAAGAATGAGCTGAACAATAAAGTCCTCGGTGTGCGT  134
             ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  104  TTCGGAATAAGTACACTCTTGGTCAAAAATGAGCTGAACAATAAAGTCCTTGGTGTGCGT  163

Query  135  TGTAGATCTAAGGACGACCACCTTGGTGATCATATTTTGCGCGTTGGCCAAATGACCAAA  194
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  164  TGTAGATCTAAGGACGACAACCTTGGTGATCATATTTTGCGCGTTGGCCAAATGACCAAA  223

Query  195  AACAATTTTGATGATAATGTTTGGAAGAGGACACTTTTCTGGTGTAATTTGTGGAAAGGA  254
            || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  224  AATAATTTTGATGATAATGTTTGGAGGAGGACGCTTTTCTGGTGTAATTTGTGGAAAGGA  283

Query  255  CCTGATTTTAAGCTCCACGTAGCGTTTGATGCATACAGATCTCAGTGGAAAGCA-ACCAT  313
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |  ||
Sbjct  284  CCTGATTTTAAGCTCCACGTAGCGTTTGATGCATACAGATCTCAATGGAAAGCGGAT-AT  342

Query  314  GGGGCCTACGTACTTGTGGATAGCAAGAGAGGATGGGATCTATTACACACAAGATCCC-A  372
             ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  343  TGGGCCTAGGTACTTGTGGATAGCAAGAGAGGATGGGATCTATTACACACAACATCCCGA  402

Query  373  GGACGCCTCCTGCGAAAAGA--TATGATTGGCCAAAGGCTTAAACGCCCGATGATTAGGG  430
            | || ||||||   ||||||  ||||||||||||||||||||||||||| | ||||||||
Sbjct  403  G-ACACCTCCTA--AAAAGAAATATGATTGGCCAAAGGCTTAAACGCCCAAGGATTAGGG  459

Query  431  TTT  433
            |||
Sbjct  460  TTT  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5