BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939833

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04320.2 | Symbols:  | Shugoshin C terminus | chr5:1209197-1...   246    7e-65


> AT5G04320.2 | Symbols:  | Shugoshin C terminus | chr5:1209197-1212578 
FORWARD LENGTH=1945
Length=1945

 Score =  246 bits (133),  Expect = 7e-65
 Identities = 239/285 (84%), Gaps = 27/285 (9%)
 Strand=Plus/Minus

Query  1    CCTTTC-AAATTCGAAAGAAAATGGAAGTCAACAATGTACCATCGTCGGCACCGGAATCT  59
            |||||| ||||||| |||||||||||||||||||||||| || ||||| |||||||||||
Sbjct  269  CCTTTCAAAATTCGGAAGAAAATGGAAGTCAACAATGTATCACCGTCGTCACCGGAATCT  210

Query  60   CCTCGATTGTCTCCTCAAGCAAATCGACGCCAA--AAATCAGAAGATTTCAG--AGACTC  115
            | |||||| |||| ||||||||||||| |||||  |||||  ||| ||||||  ||||||
Sbjct  209  CTTCGATTATCTCTTCAAGCAAATCGAAGCCAATGAAATC--AAGCTTTCAGATAGACTC  152

Query  116  ACAGCTTTCGCTCGCTTCTAAAATTGC-TACAGATGTGGTTG-AGGGGATCCGACGAAAT  173
            |||      |  | ||| |  |||| | ||||||||||| ||  |||||||| ||| |||
Sbjct  151  ACA------G--C-CTT-T--AATTTCATACAGATGTGG-TGCTGGGGATCCAACGGAAT  105

Query  174  CGACTGCTCATCTCCCAAACCCTAGATTCTT--TCTATCGAAGAAGATGGGGAAAGATAC  231
            ||||||||||||||||||||||||||||||   |||||||||||||| ||  ||||||||
Sbjct  104  CGACTGCTCATCTCCCAAACCCTAGATTCTCACTCTATCGAAGAAGACGG--AAAGATAC  47

Query  232  GGTTGCTTCGGCGGCAAACCAAGTTAATAAATTTACAAAAATAAT  276
            |||||  ||||||||||||||||| || ||||||||||||| |||
Sbjct  46   GGTTGGATCGGCGGCAAACCAAGTCAACAAATTTACAAAAA-AAT  3



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13622559979


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5