BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939836
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04390.1 | Symbols: | C2H2-type zinc finger family protein ... 1628 0.0
AT3G10470.1 | Symbols: | C2H2-type zinc finger family protein ... 363 3e-99
> AT5G04390.1 | Symbols: | C2H2-type zinc finger family protein
| chr5:1239100-1240517 FORWARD LENGTH=1418
Length=1418
Score = 1628 bits (881), Expect = 0.0
Identities = 1060/1141 (93%), Gaps = 34/1141 (3%)
Strand=Plus/Plus
Query 1 TGATCTTGAATCTCTGGCTAATGGAAGCGTTCGAAGAGGCCACAAAGGAGCACTCTTTGA 60
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 47 TGATCTTGAATCTCTTGCTAATGGAAGCGTTCGAAGAGGCCACAAAGGAGCAATCTTTGA 106
Query 61 TCCTTAAAGGGAAGCGGACGAAGCGACAACGTCCACAATCTCCTATTCCTTTCTCTATCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TCCTTAAAGGGAAGCGGACGAAGCGACAACGTCCACAATCTCCTATTCCTTTCTCTATCT 166
Query 121 CCCCTCCTATAGTTTCTTCCCCGGAACGTAACATGGAAGAAGAATTCACTGATCTTGATT 180
||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 167 CCCCTCCTATAGTTTCTACCCCGGAAAACAACATGGAAGAAGAATACACTGATCTTGATT 226
Query 181 CCAAGGACAATGCTTT-----A-G--GA----AACCACAAAAAGGATGGTGTGATCACGT 228
|||||||||||||||| | | || |||||||||||||||||||||||||| |
Sbjct 227 CCAAGGACAATGCTTTAGGAAATGATGAGGGCAACCACAAAAAGGATGGTGTGATCACAT 286
Query 229 CTTCATCTTCATCAGCCTCTTGGTCCTCTCACAACAACCCA-ATATTGAAGGCCGCAGAA 287
|||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||||
Sbjct 287 CTTCATCTTCATCAGCCTCTTGGTCCTCCCAAAACAA-TCACACATTGAAGGCAGCAGAA 345
Query 288 GACGAGGAAGATCAAGACATAGCCAATTGTTTGATCCTCCTTGCCCAAGGACACTCTCTT 347
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 346 GACGAGGAAGATCAAGACATAGCCAATTGTTTGATACTCCTTGCCCAAGGACACTCTCTT 405
Query 348 CCcaacaacaaccaccacgtaacaaacaacaacagcaacaacaacGCATACAGATTTACC 407
||| ||||||| |||||| || |||||| ||||| ||||||| ||| || |||||||||
Sbjct 406 CCCCACAACAATCACCACTTACCAAACAGCAACAACAACAAC-ACG--TATAGATTTACC 462
Query 408 AGCAGGAGGTTTCTAGAGACTTCTTCTTCAAACAGTGGTGGTAAAGCAGGTTACTACGTT 467
||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 463 AGCAGGAGGTTTCTAGAAACTTCTTCTTCTAACAGTGGTGGAAAAGCCGGTTACTACGTT 522
Query 468 TATCAGTGCAAGACATGTGACCGGACTTTTCCTTCTTTTCAAGCTTTAGGTGGCCATAGA 527
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct 523 TATCAGTGCAAGACATGTGACCGGACCTTCCCTTCTTTTCAGGCTTTAGGTGGCCACAGA 582
Query 528 GCTAGCCACAAGAAACCTAAAGCCGCCTCTTTTTACTCCAATCTTGACCTCAAGAAGAAC 587
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 583 GCTAGCCACAAGAAACCTAAAGCCGCCTCTTTTTACTCCAACCTTGACCTCAAGAAGAAC 642
Query 588 ATC-TATGCAAACGACGCCGTTTCACTTGTACACACAACCACAACTGTTTACAATAACAA 646
| | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 643 A-CGTATGCAAACGACGCCGTTTCACTTGTACACACAACCACAACTGTTT----T----- 692
Query 647 CAAGAACAATAACAGTAGATCGCTTGTCGTGTACGGTAAGGCAAGTAACAATAAGGTTCA 706
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 693 CAAGAACAATAACAGTAGATCACTTGTCGTGTACGGTAAGGCAAGTAAAAATAAGGTTCA 752
Query 707 TGAATGTGGAATCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATGAG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TGAATGTGGAATCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATGAG 812
Query 767 ACGGCACAGAGGCGCAGTGGTTGTCCCGGCGGCGGTTGCCCCCACCGTGACGGTGGCCAC 826
|||||| ||||| || |||||||| ||||||| | | |||||||||||||||||||||||
Sbjct 813 ACGGCATAGAGGAGCTGTGGTTGTTCCGGCGGTGATAGCCCCCACCGTGACGGTGGCCAC 872
Query 827 CGCTGCGGCCAACACGGAGCTATCACTGTCTTCAATGTCGTTCGATCAAATATCGGACGG 886
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 873 GGCTGCGGCCAACACGGAGCTATCACTGTCTTCGATGTCGTTCGATCAAATATCGGACGG 932
Query 887 TCA---GGATCATCTGGTGATGCCAGCGAAAAAGAAAGCTAGGAAGACGGTCGTGTCACT 943
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 933 TCATCAGGATCATCTGGCGATGCCAGCGAAAAAGAAAGCTAGGA---CGGTCGTGTCACT 989
Query 944 GGATTTGGATCTGAATCTACCCGCACCGGAAGATGAGAATCGGGTCAACGGATTCAGCTT 1003
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 990 GGATTTGGATCTGAATCTACCAGCACCGGAAGATGAGAATCGGGTCAACGGATTCAGCTT 1049
Query 1004 TGCTTCAAAACAAAATCACGAACAAGAACATCAACAGACGAAGCAAAGAGAAGAACCAAA 1063
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1050 TGCTTCAAAGCAAAATCACGAACAAGAACATCAACAGAAGAAGCAAAGAGAAGAACCAAA 1109
Query 1064 GTCTCTTGTCTTGTCTGCTCCTACTTTAGTGGATTGCCACTACTGAATTTACTATTACAT 1123
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1110 GTCTCTTGTCTTGTCTGCTCCTACTTTGGTGGATTGCCACTACTGAATTTATTATTACAT 1169
Query 1124 C 1124
|
Sbjct 1170 C 1170
> AT3G10470.1 | Symbols: | C2H2-type zinc finger family protein
| chr3:3260351-3261854 FORWARD LENGTH=1504
Length=1504
Score = 363 bits (196), Expect = 3e-99
Identities = 606/789 (77%), Gaps = 88/789 (11%)
Strand=Plus/Plus
Query 378 aacagcaacaacaacGCATACAGATTTACCAGCAGGAGGTTTCTAGAGACTTCTTC-T-T 435
|||| ||||||||| || || |||| || ||||||||||||||||||||| ||||| | |
Sbjct 509 AACAACAACAACAATGCGTATAGATCTAGCAGCAGGAGGTTTCTAGAGACATCTTCATCT 568
Query 436 --------CA-AAC--A--GTGGT---GGTAAAGCAGGTTACTACGTTTATCAGTGCAAG 479
|| ||| | ||||| || | ||| |||||||| ||||| ||||||||
Sbjct 569 AACGGGACCACAACGAACGGTGGTGGAGGCAGAGCCGGTTACTATGTTTACCAGTGCAAA 628
Query 480 ACATGTGACCGGACTTTTCCTTCTTTTCAAGCT-TTAGGTGGCCATAGAGCTAGCCACAA 538
|||||||||||||||||||| ||||| |||||| || ||||| |||||||| ||||||||
Sbjct 629 ACATGTGACCGGACTTTTCCGTCTTTCCAAGCTCTT-GGTGGGCATAGAGCCAGCCACAA 687
Query 539 GAAACCTAAAGCCGCCTCT---T-TTTACTCCAATCTTGACCTCAAGAAGAAC-ATCTAT 593
||| |||||||||| || | | || |||| || | ||||| ||||||| | | |||
Sbjct 688 GAAGCCTAAAGCCG-CTATGGGTCTTCACTCTAACCATGACCACAAGAAG-TCTAACTA- 744
Query 594 GCAAACGACGCCGTTTCACTTGTACACA-CAACCACAACTGTT-T-ACAATAA---C-AA 646
| | |||||||||| | | | | || | | ||||| ||| | || | || | ||
Sbjct 745 -C-GATGACGCCGTTT--C-TCT-C-CATC-TCAACAAC-GTTCTCACCACAACTCCTAA 795
Query 647 CAAGAACAATAA-CAGTAGATCGCTTGTCGTGTACGG-TAAGGCAAGTAACAATAAGGTT 704
||| || | ||| || |||||||||||| || ||||| |||| ||||| ||||||||
Sbjct 796 CAACAATAGTAACCA-TAGATCGCTTGTGGTATACGGCAAAGG-TAGTAATAATAAGGTC 853
Query 705 CATGAATGTGGAATCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATG 764
||||||||||| || ||||||||||| || || ||||| ||||| |||||||| ||||||
Sbjct 854 CATGAATGTGGGATATGTGGAGCCGAATTCACATCCGGGCAAGCATTAGGTGGTCACATG 913
Query 765 AGACGGCACAGAGGCGCAGTGGTTGTCC-CGGC-GGCG-GT-TGCCCCCACCGTGA-CGG 819
||||| || ||||| |||||||| | || | || | || | | || ||||||| | |||
Sbjct 914 AGACGCCATAGAGGTGCAGTGGTAG-CCGCAGCAGCCGCCTCTACCGCCACCGT-ATCGG 971
Query 820 -T--GGCCA--CC-GCTGCGGCCAACACGGAGCTATCACTGTCTTCAATGTCGTTCGATC 873
| ||||| || ||| | || ||||||| | ||| |||| |||||||||| ||||
Sbjct 972 TTGCGGCCATTCCGGCTACTGCAAACACGGCTTTGTCATTGTCGCCAATGTCGTTTGATC 1031
Query 874 AAATATCGGACGGT-CAGGATCATCTGGTGATGCCAGCGAAAAAGAAAGCTAGGAAG-AC 931
| || ||||| ||| || || || | | | || || |||| ||| ||| || |
Sbjct 1032 AGATGTCGGAGGGTCCA--AT--TC-AG-GCT-CC--CG-TTAAGAGAGCGAGG-AGCGC 1080
Query 932 GGTCGTGTCACTGGATTTGGATCTGAATCTACCCGCACCGGAAGATGAGAATCGGGTCAA 991
||| ||||| | ||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 1081 GGTTGTGTCGTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGGGTCAA 1140
Query 992 CGGATTCAGCTTTGCTTCAAAACAA-AATCACGAACAAGAACAT---CAA-CAGA-C-GA 1044
|||||| |||||||||||||| ||| || ||||||||||||||| ||| || | | ||
Sbjct 1141 CGGATTAAGCTTTGCTTCAAAGCAAGAA-CACGAACAAGAACATGAACAAACACAACAGA 1199
Query 1045 AGCAA-AGAGA-A-GAACCAAAGTCTCTTGTCTTGTCT---GCTCCTACTTTAGTGGATT 1098
|| || ||||| | |||| ||||||||||||||||||| |||||||| || |||||||
Sbjct 1200 AGAAACAGAGAGAAGAACAAAAGTCTCTTGTCTTGTCTTCTGCTCCTACATTGGTGGATT 1259
Query 1099 GCCACTACT 1107
|||| ||||
Sbjct 1260 GCCATTACT 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5