BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939838
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04410.1 | Symbols: NAC2, anac078 | NAC domain containing pr... 2892 0.0
> AT5G04410.1 | Symbols: NAC2, anac078 | NAC domain containing
protein 2 | chr5:1243758-1246684 FORWARD LENGTH=2194
Length=2194
Score = 2892 bits (1566), Expect = 0.0
Identities = 1777/1877 (95%), Gaps = 21/1877 (1%)
Strand=Plus/Plus
Query 1 AAGTTCTGG--TTCACCGATTGATGGGTCGTGGCTCAGTGACGTCGCTTGCTCCTGGGTT 58
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AAGTTCTGGTTTTCACCGATTGATGGGTCGTGGCTCAGTGACGTCGCTTGCTCCTGGGTT 260
Query 59 CCGTTTTCACCCAACGGACGAGGAACTTGTTCGCTACTACCTTAAGCGTAAGGTCTGCAA 118
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CCGTTTTCACCCGACGGATGAGGAACTTGTTCGCTACTACCTTAAGCGTAAGGTCTGCAA 320
Query 119 CAAACCCTTTAAGTTCGATGCTATTTCCGTCACCGACATATACAAATCCGAGCCTTGGGA 178
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 321 CAAACCCTTTAAGTTCGATGCTATTTCCGTCACCGACATATACAAGTCTGAGCCTTGGGA 380
Query 179 TCTACCGGATAAGTCTAAGCTGAAAAGTAGAGATTTGGAATGGTACTTCTTTAGTATGCT 238
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 381 TCTACCAGATAAGTCGAAGCTGAAAAGTAGAGACTTGGAATGGTACTTCTTTAGTATGCT 440
Query 239 GGATAAGAAATACAGTAATGGTTCAAAGACGAATCGTGCGACGGAGAAAGGGTATTGGAA 298
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 441 GGATAAGAAGTACAGTAATGGTTCCAAGACGAATCGTGCTACGGAGAAAGGGTATTGGAA 500
Query 299 GACGACTGGCAAGGATCGGGAGATTCGTAATGGTTCAAGAGTCGTTGGGATGAAGAAGAC 358
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GACGACTGGGAAAGATCGGGAGATTCGTAATGGTTCAAGAGTCGTTGGGATGAAGAAGAC 560
Query 359 ACTTGTTTATCACAAGGGTCGAGCTCCTCGTGGTGAAAGGACCAATTGGGTTATGCACGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 561 ACTTGTTTATCACAAGGGTCGAGCTCCTCGTGGTGAAAGGACCAATTGGGTTATGCATGA 620
Query 419 GTATAGGCTTTCTGATGAGGACTTGAAGAAAGCTGGTGTGCCGCAAGAAGCATATGTGTT 478
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 621 GTATCGGCTTTCTGATGAGGACTTGAAGAAAGCTGGTGTGCCACAAGAAGCATATGTGTT 680
Query 479 ATGTAGGATATTCCAGAAAAGTGGTACGGGTCCTAAGAATGGGGAGCAGTACGGTGCTCC 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 681 ATGTAGGATATTCCAGAAAAGTGGTACGGGTCCTAAGAATGGGGAGCAGTATGGTGCTCC 740
Query 539 GTT-TCTTGAGGAGGAGTGGGAAGAAGATGCAATGACTTATGTACCAGATCAAGATTCTT 597
|| |||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||
Sbjct 741 -TTATCTTGAGGAGGAGTGGGAAGAAGATGGAATGACTTATGTACCTGCTCAAGATGCTT 799
Query 598 TCAGTGAAGGATTGGCTGTTGA-TGATGATGTTTATGTTGATATTGATGACATTGACGAG 656
||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 800 TCAGTGAAGGATTGGCT-TTGAATGATGATGTTTATGTCGATATTGATGACATTGACGAG 858
Query 657 AAGCCCGAGAATCTGGTGGTCTATGATGCCGTTCCAATTCTACCTAACTACTGTCATGGA 716
|||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 859 AAGCCCGAAAATCTGGTGGTCTATGATGCCGTTCCTATTCTACCTAACTATTGTCATGGG 918
Query 717 GAATCCAGCAACAATGTTGAATCAGGCAATTACTCAGACTCTGGAAATTACATTCAACCA 776
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GAATCAAGTAACAATGTTGAATCAGGCAATTACTCAGACTCTGGAAATTACATTCAACCA 978
Query 777 GGAAACTACGTTGTCGACTCTGGTGGCTACTTTGAACAACCAATTGAAACTTTTGAGGAA 836
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 979 GGAAACAATGTTGTCGACTCTGGTGGGTACTTTGAACAACCAATTGAAACTTTTGAGGAA 1038
Query 837 GATCAGAAGCCTATCATACGGGATGGTAGCATTCAGCCTTGTTCTCTGTTTCCAGAGGAA 896
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1039 GATCGGAAGCCTATTATACGGGAGGGTAGCATTCAGCCTTGTTCTCTGTTTCCAGAGGAA 1098
Query 897 CAAATTGGCTGTGGTGTGCAAGACGAGAATGCAGTGAATCTGGAATCTTCCAACAATAAT 956
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1099 CAAATTGGCTGTGGTGTGCAAGACGAAAATGTGGTGAATCTGGAATCTTCCAACAATAAT 1158
Query 957 GTGTTTGTGGCTGATACATGCTACAGTGACATTCCTATTGAT-ACTAACTATTTGCCCGA 1015
|||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 1159 GTGTTTGTAGCTGATACATGCTACAGTGACATTCCTATTGATCA-TAACTATTTACCCGA 1217
Query 1016 TGAGCCATTTATGGATCCTAACAACAATCTTCCACTCAACGATGGTCTGTACCTGGAAAC 1075
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TGAGCCATTCATGGATCCTAATAACAATCTTCCACTCAACGATGGTCTGTACCTGGAAAC 1277
Query 1076 GAATGATCTCAGCTGTGCTCAGCAAGATGATTTTAACTTCGAAGATTATCTCAACTTCTT 1135
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1278 GAATGATCTCAGCTGTGCTCAACAAGATGATTTTAACTTCGAAGATTATCTCAGCTTCTT 1337
Query 1136 TGATGATGAGAGTTTCACTCTTGATGATTCTCAATTAATGGGACCTGAAGATGCTCTTCC 1195
|||||||||| |||| ||| |||| ||||||| ||||||||||||||||||| ||||||
Sbjct 1338 TGATGATGAGGGTTTGACTTTTGACGATTCTCTATTAATGGGACCTGAAGATTTTCTTCC 1397
Query 1196 CAACCTAGAAGGCCTTGATCAGAAACCTACCCCTGAAGAACTGGAGAAGGAGGTCGCAGG 1255
||||| ||||| |||||| ||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1398 CAACCAAGAAGCCCTTGACCAGAAACCTGCCCCTAAAGAATTGGAGAAGGAGGTCGCAGG 1457
Query 1256 AGGCAAAGAGGCGGTGGAGGAAAAGGAAAGTGGCGAAGGATCTTCATCAAAACAAGATGC 1315
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1458 AGGCAAAGAGGCAGTGGAGGAAAAGGAAAGTGGCGAAGGATCTTCTTCAAAACAAGATAC 1517
Query 1316 AGATGTCAAGGACTTTGATTCAGCTTCGAAGTACCCTTTTCTCAAGAAGACAAGCCACAT 1375
|||| |||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct 1518 AGATTTCAAGGACTTTGATTCAGCTCCGAAGTACCCATTTCTCAAAAAGACGAGCCACAT 1577
Query 1376 GCTTGGAGCCATTCCTACTCCATCTTCATTTGCTTCACAGTTCCAAACAAAGGACGCTGC 1435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 GCTTGGAGCCATTCCTACTCCATCTTCATTTGCTTCACAGTTCCAAACAAAGGACGC--- 1634
Query 1436 AATGCGGCTACACGCAGCACAATCTTCTGGTTCAGTTCACGTGACTGCAGGTATGATCAG 1495
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1635 AATGCGTCTACACGCAGCACAATCTTCTGGTTCAGTTCACGTGACTGCAGGTATGATGAG 1694
Query 1496 AATATCAAACTTGACTCTAGCAGCGGACAGCGGTATGGGCTGGTCATATGACAAGAACGG 1555
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 AATATCAAACATGACTCTAGCAGCGGACAGCGGTATGGGCTGGTCATATGACAAGAACGG 1754
Query 1556 TAACCTCAACGTAGTCCTTTCATTCGGGGTAGTCCAACGGGATGATGCGCTGAGTGCCTC 1615
|||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct 1755 TAACCTCAACGTAGTCCTTTCATTCGGGGTAGTCCAACAGGATGATGCGATGACTGCCTC 1814
Query 1616 GGGAAGCAAGACAGAAACTACGGCGACTAGAGCTATGTTAGTCTTCATGTGTTTATGGGT 1675
|||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1815 GGGAAGCAAGACAGGAATTACGGCGACAAGAGCTATGTTAGTCTTCATGTGTTTATGGGT 1874
Query 1676 TCTCCTATTCTCTGTTAGCTTCAAAATAGTAACCATGGTGTCTGCTCGGTAATAGGACCA 1735
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1875 TCTCCTACTCTCTGTTAGCTTCAAAATAGTAACCATGGTGTCTGCTCGGTAATAGGATCA 1934
Query 1736 AAAGTCGAATCGTCTCAAAAAGACTTTTT--GGTGTTTGTACCTCTCCAA-CTATATAGC 1792
|| || ||||||||||||| |||||||| ||||||||||||||||||| | |||||||
Sbjct 1935 AA-GTTGAATCGTCTCAAA--GACTTTTTTTGGTGTTTGTACCTCTCCAATC-ATATAGC 1990
Query 1793 CTTTA-CTTTGGCAGTGCTTTGCTGCTCCATATTTAAATTTTTATTTCTAAGGGTTTTGT 1851
||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||| ||
Sbjct 1991 CTTTAACTTTGGCAGTGCTTTGCTGCTCAATATTTAAATTTTTATT-CGAAGGGTTTGGT 2049
Query 1852 GTAGTTTGAAATTCTCT 1868
|||| ||||| ||||||
Sbjct 2050 GTAGCTTGAA-TTCTCT 2065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94075821330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5