BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939840
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01160.1 | Symbols: | RING/U-box superfamily protein | chr5... 462 2e-129
> AT5G01160.1 | Symbols: | RING/U-box superfamily protein | chr5:54010-55856
FORWARD LENGTH=1404
Length=1404
Score = 462 bits (250), Expect = 2e-129
Identities = 299/321 (93%), Gaps = 9/321 (3%)
Strand=Plus/Plus
Query 242 GAAAATTCAGACAATCAAGATGATGGAAGGAATCTTCATCTGTGCAGCTCCTCATTGTCT 301
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 525 GAAGATTCAAACAATCAAGATGATGGAAGGGATCTTCATCTGTGCAGCTCCTCATTGTCT 584
Query 302 TAGGTCATTCCTGAAGAAACTTGACTTTGAAGCCCATGTCCATGAGCTCCACGGAAGCCT 361
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 585 TAGGTCTTTCCTGAAGAAACTTGACTTTGAAGCCCATGTCCATGACCTCCATGGAAGCCT 644
Query 362 ATTACAAGCCGATGCAGAGAAAGAAGATGGTAACCAGTCAGATGTTCAGAGCACAATGCA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ATTACAAGCCGATGCAGAGAAAGAAGATGGTAACCAGTCAGATGTTCAGAGCACAATGCA 704
Query 422 GCAATCTTCAGCTTCAGAATCCACGTTGCGAGGTCCTTTAAGATCCCAGCAGCTACAATC 481
||| |||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||
Sbjct 705 GCAGTCTTCAGCTTCAGAATCCACCTTGCGAGCTCCTTTAAGATCCCAGCTGCAACAATC 764
Query 482 CCGTGAACAACCGTTACTAAACAGGTCGGCGTCATTTGCAAAGTCACAATCTGGATTTGG 541
|||||||| | | || ||||||||||||||||||||||||||| ||||||||| |
Sbjct 765 CCGTGAAC-----T-A--AA-CAGGTCGGCGTCATTTGCAAAGTCACAGTCTGGATTTAG 815
Query 542 TCAAGTCCAGAATTACCCTCC 562
|||||||||||||||||||||
Sbjct 816 TCAAGTCCAGAATTACCCTCC 836
Score = 292 bits (158), Expect = 3e-78
Identities = 185/198 (93%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 47 TTCTCCGGCGGAGACTGG-AAATGGAGCCTGTCCTGACCATCTCGTCCTCGCTGATCTTC 105
||||||| ||||||| || | || ||||||||| ||||||||||||||||| |||||||
Sbjct 252 TTCTCCGACGGAGAC-GGTTACTGTAGCCTGTCCCGACCATCTCGTCCTCGCCGATCTTC 310
Query 106 CTGTTGCGAAAGGAATCGGTTCCGTGACTCCAACCACCGTAATCAAGCCTGTTGGTCGTC 165
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 311 CTGTTGCGAAAGGAATCGGTTCCGTGACTCCCACCACCGTAATCAAGCCCGTCGGTCGTC 370
Query 166 GTTCTCGCCGTCAGCTAGGCGAGAGAGTTCATTTCTGCGTCCGTTGCGATTTTCCGATTG 225
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 371 GTTCTCGCCGTCAGCTAGGCGAGAGAGTTCACTTCTGCGTTCGTTGCGATTTTCCGATTG 430
Query 226 CAATCTATGGTCGTCTGA 243
||||||||||||||||||
Sbjct 431 CAATCTATGGTCGTCTGA 448
Score = 159 bits (86), Expect = 3e-38
Identities = 96/101 (95%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 626 ACCAATGATGAATCTGAATTTCCAAGGATCGTATCCTCCTCCGTCATGGAATCCTGGAAT 685
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1119 ACCAATGACGAATCTGAATTTCCAAGGATCGTATCCTCCTCCATCATGGAATCCCGGAAT 1178
Query 686 GGCACTGCCTCAAACGACCCAGCAGGTTAACCGGGGTAGAG 726
||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1179 GGCACCGCCTCACACGACCCAGCAGGTTAACCGGGGTAGAG 1219
Score = 63.9 bits (34), Expect = 2e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 726 GGGTGGCAACAAGAGAACCGTGATGGCTTTGGGCAGG 762
||||||| |||||||||||||||||||||||||||||
Sbjct 1234 GGGTGGCCACAAGAGAACCGTGATGGCTTTGGGCAGG 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5