BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939849
Length=2338
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04500.1 | Symbols: | glycosyltransferase family protein 47... 3664 0.0
> AT5G04500.1 | Symbols: | glycosyltransferase family protein
47 | chr5:1283468-1286359 FORWARD LENGTH=2638
Length=2638
Score = 3664 bits (1984), Expect = 0.0
Identities = 2222/2340 (95%), Gaps = 4/2340 (0%)
Strand=Plus/Plus
Query 1 GAAGAAAATTTCGTTTTCCGATGATGGAAGAGACGACGGAAAACGCCGGAA-AACTCAGC 59
|||||||| ||||||||| ||||||||||||||||||||| ||| |||||| || |||||
Sbjct 117 GAAGAAAAATTCGTTTTCTGATGATGGAAGAGACGACGGATAACACCGGAACAA-TCAGC 175
Query 60 TCGCAGAAGAACGTCGCTGCTTCTGGTCACAATCATCACAACCGTTACAAATACCTCTCA 119
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 176 TCGCAGAAGAACGTTGCTGCTTCTGGTCACAATCATCACCACCGTTACAAATATATCTCA 235
Query 120 AATTACGGCGCCGGGAGGCGTTTTCTGTTCTTCGCTTCGTGTTTTGGAGTTTACGCTTTG 179
|||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 236 AATTACGGCGTCGGGAGGCGTTTTCTGTTCTTCGCTTCCTGTTTTGGATTTTACGCTTTC 295
Query 180 GTGGCTGCGACGTACGCTTGGTTCGTGTTTCCGCCGCATATCGGTCGTACGGATCATGTA 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GTGGCTGCGACGTACGCGTGGTTCGTGTTTCCGCCGCATATCGGTCGTACGGATCATGTA 355
Query 240 TCGTCGTCTTCGTTAGGTTGCAGAGAAGACAATGAAGGTTCATGGTCCATTGGTGTTTTC 299
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 356 TCGTCGTCTTCCTTAGGTTGCAGAGAGGACAATGAAGGTTCATGGTCCATTGGTGTTTTC 415
Query 300 TATGGAGATTCTCCATTCTCTCTCAAACCAATCGAAACCATCAATGTATGGAGGAACGAG 359
|||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 416 TATGGAGATTCTCCCTTCTCTCTCAAACCAATCGAAACCAGAAATGTATGGAGAAACGAG 475
Query 360 AGTGGAGCATGGCCTGTGGCTAATCCAGTAATAACATGTGCCTCCTTCACCAATGCTGGT 419
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 476 AGTGGAGCATGGCCTGTGACTAATCCAGTAATAACATGTGCCTCCTTCACCAATTCTGGT 535
Query 420 CTTCCAAGCAACTTTGTAGCTGATCCTTTTCTTTATGTACAGGGTGATACTCTTTACCTC 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTTCCAAGCAACTTTCTAGCTGATCCTTTTCTTTATGTACAGGGTGATACTCTTTACCTC 595
Query 480 TTCTTCGAAACTAAAAGCCCCATTACAATGCAAGGTGATATAGGAGTTGCTAAAAGTATT 539
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 596 TTCTTCGAAACTAAAAGCCCCATTACAATGCAAGGGGATATAGGAGCTGCTAAAAGTATT 655
Query 540 GATAAAGGAGCTACTTGGGAACCTCTTGGTATAGCTTTGGATGAAGCTTGGCACTTGTCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GATAAAGGAGCTACTTGGGAACCTCTTGGTATAGCTTTGGATGAAGCTTGGCACTTGTCT 715
Query 600 TTTCCATTTGTCTTCAATTACAACGGAGAAATATTCATGATGCCGGAGAGCAACGAGATT 659
|||||||| ||||||||||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct 716 TTTCCATTCGTCTTCAATTACAACGGAGAAATATACATGATGCCCGAGAGTAATGAGATT 775
Query 660 GGACAGCTTAATCTCTACCGTGCTGTTAACTTTCCTTTAAGTTGGAAGCTGGAGAAAGTT 719
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 776 GGACAGCTTAATCTCTACCGTGCTGTTAACTTTCCATTAAGTTGGAAGCTGGAGAAAGTT 835
Query 720 ATCTTGAAAAAGCCGCTTGTGGATTCGACCTT-GATACATCACGAAGGAATTTATTGGCT 778
|||||||||||||| ||||| ||||||||| | | | ||||| |||||||| ||||||||
Sbjct 836 ATCTTGAAAAAGCCTCTTGTTGATTCGACCATAG-TCCATCATGAAGGAATCTATTGGCT 894
Query 779 ATTTGGATCAGATCATAGTAGTTTTGGGGCCAAGAAGAATGGACAGCTTGAAATTTGGTA 838
| | ||||||||||||| | |||||||||| ||||| |||||||| || |||||||||||
Sbjct 895 AATCGGATCAGATCATACTGGTTTTGGGGCGAAGAAAAATGGACAACTAGAAATTTGGTA 954
Query 839 TAGTAGCTCTCCACTAGGGACGTGGAAACCACACAAGAAGAATCCTATCTACAATGGTAA 898
|||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 955 TAGTAGCTCTCCTTTAGGGACATGGAAGCCACACAAGAAGAATCCTATCTACAATGGTAA 1014
Query 899 TAGAAGTGTTGGAGCAAGAAACGGAGGCAGAGCGTTTTTATATGACGGGAATCTTTATCG 958
|||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1015 AAGAAGTATTGGAGCAAGAAACGGAGGCAGAGCGTTTCTATATGACGGGAGTCTTTATCG 1074
Query 959 TGTTGGTCAAGATTGTGGTGAAAATTACGGGAAAAGGATACGCGTTTTTAAGATTGAGGT 1018
|||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct 1075 TGTTGGTCAAGATTGTGGTGAAAATTACGGCAAAAGGATACGTGTTTCTAAGATTGAGGT 1134
Query 1019 TCTTTCCAAGGAAGAGTACAGAGAAGTTGAAGTCCCTTTCTCTTTTGAAGCGTCGCATAA 1078
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1135 TCTTTCCAAGGAAGAGTACAGAGAAGTTGAAGTCCCTTTCTCTTTGGAAGCGTCGCGTAA 1194
Query 1079 GGGTAAAAATTCTTGGAACGGAGTTCGGCAGCATCATTTTGATGTGAAACAGCTGAGTTC 1138
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 1195 AGGTAAAAATTCTTGGAACGGGGTTAGGCAGCATCATTTTGATGTGAAACAGCTAAGTTC 1254
Query 1139 TGGTGAATTCATTGGTCTTCTTGATGGTGACCGTGTAACTTCAGGCGATCTGTTTCATCG 1198
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGGTGAATTCATTGGTCTTGTTGATGGTGACCGTGTAACTTCAGGCGATCTGTTTCATCG 1314
Query 1199 GGTTATTCTCGGTTATGCCTCACTTGCGGCTGCTATTTCCGTGGTTATATTACTTGGGTT 1258
||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 1315 GGTTATTCTTGGTTATGCCTCACTTGCAGCTGCTATTTCCGTTGTTATCTTACTTGGCTT 1374
Query 1259 TTTGCTTGGGGTTGTGAACTGCATTGTTCCATCAACCTGGTGTATGAACTACTATGCGGG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TTTGCTTGGGGTTGTGAACTGCATTGTTCCATCAACCTGGTGTATGAACTACTATGCGGG 1434
Query 1319 AAAAAGAACCGATGCGCTCCTGAATCTGGAAACTGCGGGTTTGTTCTCAGAAAAGTTAAG 1378
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1435 GAAAAGAACCGATGCGCTCCTGAATCTCGAAACTGCGGGTTTGTTCTCAGAAAAGTTAAG 1494
Query 1379 ACGGATTGGTTCTCGCTTGAACAGAGTACCGCCTTTTCTCAGAGGATTTGTGAAGCCTAA 1438
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1495 ACGGATTGGTTCTCGCTTGAACCGAGTACCGCCTTTTCTCAGAGGATTCGTGAAGCCTAA 1554
Query 1439 TTCCTCCATGGGAAAATTTACACTCGGTGTTATTGTCCTTGTAGGACTTTTGCTCACATG 1498
|||||||||||| |||||||| ||||||||||| ||| || |||||||||||||||||||
Sbjct 1555 TTCCTCCATGGGGAAATTTACGCTCGGTGTTATAGTCATTTTAGGACTTTTGCTCACATG 1614
Query 1499 TGTAGGCGTGAGATACATCTATGGCGGAAGCGGAACCGTTGAGCCTTACCCATTCAAAGG 1558
||||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||
Sbjct 1615 TGTAGGCGTGAGATACATCTACGGTGGAAGCGGAGCCGTTGAGCCTTATCCATTCAAAGG 1674
Query 1559 TCACTTGTCTCAGTTCACGTTAGCAACTATGACTTACGATGCTCGTCTCTGGAATCTGAA 1618
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1675 TCACTTGTCTCAGTTTACGTTAGCAACTATGACTTATGATGCTCGTCTCTGGAATCTGAA 1734
Query 1619 AATGTACGTTAAGCGTTACTCTCGGTGTCCTTCCGTCAAAGAGATAGTTGTCATATGGAA 1678
||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1735 AATGTACGTAAAGCGTTACTCTCGTTGTCCATCCGTTAAAGAGATAGTTGTCATATGGAA 1794
Query 1679 CAAAGGACCGCCTCCTGAACTGACCGAGCTAGACTCCGCCGTGCCAGTCAGAATCCGAGT 1738
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 1795 CAAAGGACCGCCTCCTGACCTGTCCGAGCTAGACTCCGCGGTGCCAGTCAGAATCAGAGT 1854
Query 1739 CCAGAAACAGAATTCTCTGAACAACAGATTTGAGATCGATCCGCTGATTAAAACCCGAGC 1798
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1855 CCAGAAACAGAATTCTCTGAACAACAGATTCGAGATCGATCCGCTGATTAAAACCCGAGC 1914
Query 1799 CGTTCTTGAGCTTGACGACGATATAATGATGCCTTGTGATGACATTGAAAAGGGGTTTAG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1915 CGTTCTTGAGCTTGACGACGATATAATGATGCCTTGTGATGACATTGAAAAAGGGTTTAG 1974
Query 1859 AGTTTGGCGGGAGCATCCAGAGAGACTGGTCGGATTCTACCCTCGTTTTGTTGATCAAAC 1918
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1975 AGTTTGGCGGGAGCATCCAGAGAGACTGGTCGGATTCTACCCGCGTTTTGTTGATCAAAC 2034
Query 1919 CATGACTTATAGCGCAGAGAAGTTTGCGAGAAGTCATAAAGGATACAATATGATTCTCAC 1978
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2035 CATGACTTATAGCGCAGAGAAGTTTGCAAGAAGTCATAAAGGATACAATATGATTCTCAC 2094
Query 1979 CGGTGCAGCGTTTATGGACGTTCGCTTTGCCTTTGATATGTATCAATCAGATAAAGCGAA 2038
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 GGGTGCAGCGTTTATGGACGTTCGCTTTGCCTTTGATATGTATCAATCAGATAAAGCGAA 2154
Query 2039 ACTCGGTCGGGAATTTGTGGGCGAGCAGTTTAATTGTGAAGACATTTTACTGAATTTCCT 2098
||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 2155 ACTTGGTCGGGTATTTGTGGACGAGCAGTTTAATTGCGAAGACATTTTACTGAATTTCCT 2214
Query 2099 GTACGCGAATGCGAGCGGGTGGGGAAAAGCCGTGGAGTATGTGAGACCGTCTTTGGTAAC 2158
|||||||||||| || || | ||||| || |||||||||||||||||||||||||| ||
Sbjct 2215 GTACGCGAATGCTAGTGGATCAGGAAAGGCTGTGGAGTATGTGAGACCGTCTTTGGTTAC 2274
Query 2159 AATTGACACTTCGAAATTTTCCGGTGTAGCAATTAGTGGAAACACGAACCAACATTACAG 2218
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2275 AATTGACACTTCGAAATTTTCCGGTGTAGCGATTAGTGGAAACACGAACCAACATTACAG 2334
Query 2219 AAAGAGAAGTAAGTGTCTCCGGCGATTCTCTGATTTGTATGGAAGTTTGGCTGATCGAAT 2278
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 2335 AAAGAGAAGTAAGTGTCTCCGGCGATTCTCGGATTTGTATGGAAGTTTGGTTGATCGAAG 2394
Query 2279 ATGGGAATTTGGTGGGAGAAAAGACGGGTGGGATTTGTAGAACAGTAGTGTTACTTATAG 2338
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 2395 ATGGGAATTTGGTGGGAGAAAAGACGGGTGGGATTTGTAGATCAGTAGAGTTACTTGTAG 2454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116063660040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5