BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939850

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03980.1 | Symbols:  | SGNH hydrolase-type esterase superfam...   551    2e-156


> AT5G03980.1 | Symbols:  | SGNH hydrolase-type esterase superfamily 
protein | chr5:1074205-1075289 REVERSE LENGTH=972
Length=972

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 338/358 (94%), Gaps = 0/358 (0%)
 Strand=Plus/Plus

Query  4    GCATCTCAACGAATTTGCAATGGATCACAATAACCAACTCCAAGAAGCTATAGCTTCTTT  63
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  615  GCATCTCAACGAATTCGCAATGGATCACAATAACCAACTCCAAGAAGCTATAGCTTCTTT  674

Query  64   GAGAAAAGAGTTTCCAGATGTGGCTATAGTCTACGGAGACTACTACAACACGTTTCAATA  123
            |||||||||||||||||| ||||||||||| |||||||| ||||||||  ||||||||||
Sbjct  675  GAGAAAAGAGTTTCCAGACGTGGCTATAGTATACGGAGATTACTACAATGCGTTTCAATA  734

Query  124  CGTTCTACGCAGTGAAGGATTCGACAAGAGTGTAGCTTTGAAATCGTGTTGCGGGGTCGG  183
            ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  |||
Sbjct  735  CGTTCTACGAAGTGAAAGATTCGACAAGAGTGTAGCTTTGAAATCGTGTTGCGGGACCGG  794

Query  184  TGGAGCTTACAACTACGACGGAAAGAGGCCTTGCGGAGTAGCAGGAGTACCGGTGTGTCA  243
            |||||||||||||||||||||||||||||| | ||||| ||  ||||| |||||||||||
Sbjct  795  TGGAGCTTACAACTACGACGGAAAGAGGCCATACGGAGCAGTGGGAGTTCCGGTGTGTCA  854

Query  244  GAATCCAGACAAGTTCATAAGTTGGGACGGAGTGCACTTGACTCAAAAGGCTTATAGATT  303
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  855  GAATCCACACAAGTTCATAAGTTGGGACGGAGTGCACTTGACTCAAAAGGCTTATAGATT  914

Query  304  CATGTCTAAGCTCTTCAACTATCAGATTCTTTCACAGATCAAGTGTACTAGGGCTTAA  361
            |||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct  915  CATGTCTAAGTTCTTGAACAATCAGATTCTTTCACAGATCAAGTGTACTAGGGCTTAA  972



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5