BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939856
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04550.1 | Symbols: | Protein of unknown function (DUF668) ... 2981 0.0
> AT5G04550.1 | Symbols: | Protein of unknown function (DUF668)
| chr5:1303180-1306116 REVERSE LENGTH=2580
Length=2580
Score = 2981 bits (1614), Expect = 0.0
Identities = 1750/1817 (96%), Gaps = 4/1817 (0%)
Strand=Plus/Plus
Query 9 GGTTGAGAGAGGATGGTTTCAGAGACTTGGTTTCGTAATCTGTGGAGGTTTCCAAAGAAA 68
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GGTTGAGAGAAGATGGTTTCAGAGACTTGGTTTCGTAATCTGTGGAGGTTTCCAAAGAAA 251
Query 69 CATGATGTTCATAAAGATAAGGCGGTGCTCGGAGTATTAGCGTTTGAGGTTGCGAGTTTG 128
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 252 CATGATGGTCATAAAGATAAGGCGGTTCTAGGAGTATTAGCGTTTGAGGTTGCGAGTTTG 311
Query 129 TTGTCGAAGCTTGTTCATTTGTGGCAGTCACTAAGTGATAAGAATGTTGCAAGGCTTAGG 188
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 312 TTGTCGAAGCTTGTTCATTTGTGGCAGTCATTAAGTGATAAGAATGTTGCAAGGCTTAGG 371
Query 189 GACGAGATTACGCATTCCACCGGTATAAAGAAGCTAGTTTCAGAGGACGATGATTTTATC 248
||||||||||| |||||||| |||||||||||| |||||||||| || |||||||||||
Sbjct 372 GACGAGATTACACATTCCACTGGTATAAAGAAGTTAGTTTCAGAAGATGATGATTTTATT 431
Query 249 GTCAGGTTGATACGCGATGAAATGATGGAGAACGTTGAGAATGTAGCGAAAGCTGTTGCT 308
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 432 GTGAGGTTAATACGTGATGAAATGATGGAGAACGTTGAGAATGTAGCGAAAGCTGTGGCT 491
Query 309 AGGCTTGCGAGGAAATGCAACGATCCCAAGTTGAAATGCTTTGAGAATTGTTTTAGTGAT 368
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 492 AGGCTTGCGAGGAAATGCAACGATCCCAAGTTGAAGTGCTTTGAGAATTGTTTTAGTGAT 551
Query 369 ATGATGAAGACTGGAGCTGACCCTTATGGGTGGCAGTTTGGGTGGAAGAAAATGGATAAG 428
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 552 ATGATGAAGACTGGAGCTGACCCTTATGGTTGGCAGTTTGGGTGGAAGAAAATGGATAAG 611
Query 429 AAAGCAAAGAAAATGGAACGTTTCATCTCATCAAATGCTAGCCTCTACCAGGAGACTGAG 488
||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 612 AAAGCTAAGAAAATGGAACGTTTCATATCATCTAATGCTAGTCTCTACCAGGAGACTGAG 671
Query 489 ATTCTGGCCGATCTTGAACAGACTTTCAAGAGAATGAAGAGCAATGAATCTGCAACTGAC 548
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 672 ATTCTTGCTGATCTTGAACAGACTTTCAAGAGAATGAAGAGCAATGAATCTGCTACTGAC 731
Query 549 AATCTTTTGGAGTATCAGAAAAAAGTTACATGGAAAAGACATGAAGTGAAGAATCTGCGG 608
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 732 AATCTTTTGGAGTATCAGAAAAAAGTTACATGGAAAAGACACGAAGTGAAGAATCTGCGG 791
Query 609 GATGTGTCTCTTTGGAACCGTACTTATGACTATACCGTCCTTCTCTTGGTTAGATCAGTT 668
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 792 GATGTGTCTCTTTGGAACCGTACTTATGACTATACCGTCATTCTCTTGGTTAGATCAGTT 851
Query 669 TTCACAATCCTTAGCAGGACTAAACATGTTTTTGGC-TTGAGTTACAGAATGGAAGCAAG 727
|||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 852 TTCACAATCCTTAGCAGGACTAAACATGTTTTTGGCATT-AGTTACAGAGTGGAAGCAAG 910
Query 728 TGATGTTAGCTCTGCAGATTCTGATTTCATTGGCCGCAGCCACTCGGTTTCTACAATTTT 787
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 911 TGATGTTAGCTCTGCAGATTCTGATTTTATTGGCCGCAGCCACTCCGTTTCTACTATTTT 970
Query 788 AACTCCTGTATCTCATAAATCTGAGACTAGCGGTCTTCCTAGATTTGCTTCTGGTCCCCT 847
||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 971 AACTCCTGTATCTCATAAATCTGAGTCTAGTGGTCTTCCTAGATTTGCTTCTGGCCCCCT 1030
Query 848 TGGAAGATTTACCGGTCCAGCATCAGGTTCAGCTGCTACAAGGTCCACGAAGATGAGTGA 907
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1031 TGGAAGATTTACCGGTCCAGCATCGGGTTCAGCTGCTACAAGGTCCACGAAGATGAGTGA 1090
Query 908 TTTCCTTTCCGGTTCTCTCAGCGCCGAATCCCCTAAGTCAGGTCCTCTTGTTGCAGAAAA 967
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1091 TTTCCTTTCGGGTTCTCTCAGCGCCGAATCACCTAAGTCAGGTCCTCTTGTTGCAGAAAA 1150
Query 968 ACACAAACGTTTCAAGTTTTACTCAGGCCAGCTCGGGAAAATCACCTCCAAATCAGGACC 1027
|||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 1151 ACACAAACGTTTCAAGTTTTACTCTGGTCAGCTTGGGAAGATCACCTCCAAATCAGGACC 1210
Query 1028 ACTTATCGGAATGGGCAAAAACAACAAGAAGATGGGGCAGACACCGGAAAGACCTTCAAT 1087
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1211 ACTTATCGGAATGGGCAAAAACAACAAGAAGATGGGGCAGACCCCGGAAAGGCCTTCAAT 1270
Query 1088 TTCCTCAGTGAAAAAGCAATTGAAAGCCAACCGGTTAACACAGGTTGGCCCGTTTAAAGG 1147
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1271 TTCCTCAGTGAAAAAGCAATTGAAAGCCAACCGATTAACACAGGTTGGCCCATTTAAAGG 1330
Query 1148 CTGTATGGTGTCTCACGATGGGATTACTCCTCTCAGCACTAAGACCCGGAATGGAGCTAG 1207
||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 1331 CTGTATGGTGTCTCACGATGGGATTACGCCTCTCAGCACTAGGGCCCGGAATGGAGCTAG 1390
Query 1208 GAATAGTAGTGCTGAGCATCACATTCTTGAAGGA-AATTCTAACTCTGTCCACGTTGAAA 1266
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1391 GAATAGTAGTGCTGAGCATCACATTCTTGAA-GATAATTCTAACTCTGTTCACGTTGAAA 1449
Query 1267 ACTTGACACTTCCTACCCGACCTAAGTTGTCAGATGCTGCTCCTAATACCCTTGGTGCAG 1326
|||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| | |
Sbjct 1450 ACTTGACACTTCCTTCCCGACCCAAGCTGTCAGATGCTGCTCCTAATACCCTTGGTACCG 1509
Query 1327 CTTGCTTAGCATTACACTATGCAAATGTCATCATCGTGATAGAGAGATTTGTTGCATCTC 1386
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1510 CTTGCTTAGCATTACACTATGCTAATGTCATCATCGTGATAGAGAGATTTGTTGCGTCTC 1569
Query 1387 CTCACTTGATAGGCGATGATGCAAGAGACGACCTTTACAACATGTTACCGGCGAGCGTGA 1446
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 CTCACTTGATAGGAGATGATGCAAGAGACGACCTTTACAACATGTTACCGGCGAGCGTGA 1629
Query 1447 GAACATCGCTTAGAGAAAGGCTAAAACCGTACTCGAAAAACTTGAGTTCTTCCACAGTTT 1506
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1630 GAACATCGCTTAGAGAAAGGCTAAAACCTTACTCGAAAAACTTGAGTTCTTCCACAGTTT 1689
Query 1507 ATGATCCAGGACTAGCAAAAGAATGGACAGACGCAATGGCGGGTATCTTGGAATGGTTGG 1566
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 ATGATCCAGGCCTAGCAAGAGAATGGACAGACGCAATGGCGGGTATCTTGGAATGGTTGG 1749
Query 1567 GTCCATTAGCTCACAACATGATAAAATGGCAATCTGAGCGGAGTTACGAGCACCAAAGCT 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 GTCCATTAGCTCACAACATGATAAAATGGCAATCTGAGCGGAGTTACGAGCACCAAAGCT 1809
Query 1627 TGGTTTCAAGGACGCACATAGTTCTTGCACAAACCCTTTTCTTTGCAAACCAGCAGAAGA 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 TGGTTTCAAGGACGCACATAGTTCTTGCACAAACCCTTTTCTTTGCAAACCAGCAGAAGA 1869
Query 1687 CAGAAGCCATCATTACCGAGCTTCTTGTTGGCCTCAATTATGTCTGGAGATTTGGCAGAG 1746
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1870 CAGAAGCCATCATTACCGAGCTTCTCGTAGGCCTCAATTATGTCTGGAGATTTGGCAGAG 1929
Query 1747 AACTTAACGCCAAGGCTCTTCAGGAGTGTACCAGTAGTAAAACCCTTGAGAAATGCTTGG 1806
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 AACTCAATGCCAAGGCTCTTCAGGAGTGTACCAGTAGTAAAACCCTTGAGAAATGCTTGG 1989
Query 1807 ACACAGATAACTAGTGA 1823
|||||||||||||||||
Sbjct 1990 ACACAGATAACTAGTGA 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91164189720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5