BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939859
Length=2158
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04590.1 | Symbols: SIR | sulfite reductase | chr5:1319356-1... 3483 0.0
> AT5G04590.1 | Symbols: SIR | sulfite reductase | chr5:1319356-1322526
FORWARD LENGTH=2205
Length=2205
Score = 3483 bits (1886), Expect = 0.0
Identities = 2084/2177 (96%), Gaps = 23/2177 (1%)
Strand=Plus/Plus
Query 1 CTC-TCTCTTTCTCTGAAGCGATGTCATCGACGTTTCGAGCTCCGGCGGGCGCCGCCACT 59
||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 28 CTCTTCTCTCTCTCTGAAGCGATGTCATCGACGTTTCGAGCTCCGGCGGGAGCCGCTACT 87
Query 60 GTGTTTTCGGCGGATCAGAAGATCAGACTTGGGAGGCTCGACGCTCTGAGATCCTCTCAT 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 GTGTTTACGGCGGATCAGAAGATCAGACTTGGGAGGCTCGACGCTCTGAGATCCTCTCAT 147
Query 120 TCTGTTTTCTTAGGAAGATATGGACGCGCCGGCGTTTCC-GTTCCTCCTTCCGCTTCTTC 178
|||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||
Sbjct 148 TCTGTTTTCTTAGGAAGATATGGACGCGGCGGCG-TCCCGGTTCCTCCTTCCGCTTCTTC 206
Query 179 GTCGAGTTCTTCGCCTATTCAAGCCGTCTCCACGCCTGCGAAGCCTGAGACTACGACCAA 238
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 207 GTCGAGTTCTTCGCCTATTCAAGCCGTCTCCACTCCTGCGAAGCCTGAGACTGCGACCAA 266
Query 239 GCGGAGCAAAGTCGAAATAATCAAGGAGAAGAGTAATTTCATAAGGTATCCTTTAAACGA 298
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 267 GCGGAGCAAAGTCGAAATTATCAAGGAGAAGAGTAATTTCATAAGGTATCCTTTGAACGA 326
Query 299 GGAGCTTTTAACAGAGGCTCCAAACGTCAACGAGTCGGCCGTGCAGCTCATTAAGTTCCA 358
|||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||
Sbjct 327 GGAGCTTTTAACAGAGGCTCCAAATGTCAACGAGTCAGCCGTGCAGCTTATCAAGTTCCA 386
Query 359 CGGTAGCTACCAACAGTACAACAGAGAGGAACGTGGTGGAAGATCTTACTCATTCATGCT 418
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 387 CGGTAGCTACCAACAGTACAACAGAGAAGAACGTGGTGGAAGATCTTACTCCTTCATGCT 446
Query 419 TCGAACTAAGAATCCATCTGGGAAGGTCCCTAACCAGCTCTACTTGACTATGGATGACTT 478
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 447 TCGAACTAAGAATCCATCTGGGAAGGTCCCTAACCAGCTCTATTTGACTATGGATGACTT 506
Query 479 AGCCGATGAGTTTGGAATTGGTACGCTTCGTTTGACCACCAGGCAGACGTTTCAGCTCCA 538
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 507 AGCTGATGAGTTTGGAATTGGTACTCTTCGTTTGACCACAAGGCAGACGTTTCAGCTTCA 566
Query 539 TGGTGTTCTGAAGCAGAATCTGAAGACCGTGATGAGCTCGATTATTAGAAATATGGGTAG 598
||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct 567 TGGTGTTCTGAAGCAGAATCTTAAGACTGTGATGAGCTCGATTATTAAAAATATGGGTAG 626
Query 599 CACTCTTGGTGCATGTGGTGATCTGAACAGAAATGTTCTTGCTCCAGCGGCGCCTTATGT 658
||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 627 CACGCTTGGTGCATGTGGTGATCTGAACAGAAATGTTCTTGCTCCTGCTGCACCTTATGT 686
Query 659 GAAGAAAGACTATCTCTTTGCACAAGAAACAGCTGACAACATTGCGGCTCTTCTTTCTCC 718
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 687 GAAGAAAGACTATCTCTTTGCACAAGAAACTGCTGACAACATTGCGGCTCTTCTTTCTCC 746
Query 719 TCAATCAGGGTTCTATTATGATATGTGGGTTGATGGAGAGCAGTTCATGACTGCTGAGCC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 747 TCAATCAGGGTTCTATTATGATATGTGGGTTGATGGAGAGCAGTTCATGACTGCTGAACC 806
Query 779 TCCGGAGGTAGTGAAGGCTCGAAATGATAACTCCCATGGGACTAACTTTGTCGACTCTCC 838
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 807 TCCAGAGGTAGTGAAGGCTCGAAATGATAACTCCCATGGAACTAACTTTGTCGACTCTCC 866
Query 839 TGAGCCCATCTATGGCACCCAGTTCTTGCCTAGGAAGTTCAAGGTCGCTGTAACTGTGCC 898
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 867 TGAGCCCATCTATGGCACCCAGTTCTTGCCTAGAAAGTTCAAGGTCGCTGTAACTGTTCC 926
Query 899 TACGGATAATTCTGTCGACCTCCTCACCAATGACATTGGTGTTGTTGTCGTTTCAGATGA 958
||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 927 TACAGATAATTCCGTCGACCTCCTCACCAATGACATTGGCGTTGTTGTTGTTTCAGATGA 986
Query 959 AAATGGGGAACCACAAGGTTTCAATATTTATGTTGGTGGGGGTATGGGAAGAACACACAG 1018
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 AAATGGGGAACCACAGGGTTTCAATATTTATGTTGGTGGGGGTATGGGAAGAACACACAG 1046
Query 1019 AATGGAGTCCACTTTTGCCCGCCTGGCAGAACCAATAGGTTATGTTCCAAAGGAGGATAT 1078
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1047 AATGGAGTCTACTTTTGCCCGCCTGGCAGAACCAATAGGTTATGTTCCAAAGGAAGATAT 1106
Query 1079 TTTGTATGCTGTGAAAGCCATTGTAGTCACACAACGAGAACACGGGAGACGAGATGATCG 1138
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1107 TTTGTATGCTGTGAAGGCCATTGTAGTCACACAGCGAGAACACGGGAGACGAGATGATCG 1166
Query 1139 TAAATATAGCAGAATGAAATATTTGATCAGCTCCTGGGGAATTGAGAAATTCAGAGATGT 1198
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1167 TAAATATAGCAGAATGAAATATTTGATCAGCTCCTGGGGAATTGAGAAGTTCAGAGATGT 1226
Query 1199 TGTTGAGCAATATTATGGTAAAAAGTTTGAGCCTTCCCGTGAACTTCCAGAGTGGGAGTT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TGTTGAGCAATATTATGGTAAAAAGTTTGAGCCTTCCCGTGAACTTCCAGAGTGGGAGTT 1286
Query 1259 CAAGAGTTACTTGGGATGGCATGAACAGGGAGATGGTGCATGGTTTTGTGGGCTTCACGT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 CAAGAGTTACTTGGGATGGCATGAACAGGGAGATGGTGCATGGTTTTGTGGGCTTCACGT 1346
Query 1319 GGACAGTGGTCGTGTTGGAGGTATAATGAAGAAGACACTGAGAGAAGTGATAGAGAAATA 1378
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1347 AGACAGTGGTCGTGTTGGAGGTATAATGAAGAAGACGCTGAGAGAAGTAATAGAGAAATA 1406
Query 1379 CAAAATTGATGTCCGCATCACACCAAACCAAAACATTGTCTTGTGTGATATAAAGACCGA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1407 CAAAATTGATGTCCGCATCACACCAAACCAAAACATTGTCTTGTGTGATATAAAGACTGA 1466
Query 1439 ATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTGCTGCAACCTGAGTTTGT 1498
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1467 ATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGCAACCTGAGTTTGT 1526
Query 1499 GGACCCATTAAACCAAACCGCAATGGCTTGCCCAGCTTTTCCTTTGTGTCCTCTGGCAAT 1558
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1527 CGACCCATTAAACCAAACTGCAATGGCTTGCCCAGCTTTTCCTTTGTGCCCTCTGGCAAT 1586
Query 1559 AACCGAGGCAGAGCGCGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAGAA 1618
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1587 AACTGAGGCAGAGCGCGGGATCCCCAGCATTCTAAAGAGAGTTAGGGCAATGTTTGAAAA 1646
Query 1619 GGTTGGTCTGGACTACGATGAATCTGTTGTGATAAGAGTAACTGGTTGTCCAAACGGCTG 1678
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1647 GGTTGGTCTGGACTACGACGAGTCTGTTGTGATAAGAGTAACCGGTTGTCCAAACGGCTG 1706
Query 1679 TGCAAGACCATACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGGT 1738
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 TGCAAGACCGTACATGGCTGAGCTCGGTCTAGTCGGGGATGGTCCCAACAGCTATCAGGT 1766
Query 1739 TTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATGGATAAGGTTAA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767 TTGGCTAGGAGGAACACCGAACCTGACCCAGATAGCGAGAAGTTTCATGGATAAGGTTAA 1826
Query 1799 GGTTCACGACTTAGAGAAAGTGTTCGAGCCATTGTTTTATCACTGGAAACTAGAGAGGCA 1858
||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 1827 GGTTCACGACTTAGAGAAAGTCTGCGAGCCATTGTTCTATCACTGGAAACTAGAGAGGCA 1886
Query 1859 AACCAAAGAATCATTTGGAGAATACACAACCCGCATGGGATTCGAGAAACTGAAGGAGCT 1918
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887 AACTAAAGAATCATTTGGAGAATACACAACCCGCATGGGATTCGAGAAACTGAAGGAGCT 1946
Query 1919 GATAGATTCATACAAAGGAGTTTCTCAATAAGG-CA-CAGAGATCATCTTTCGTCTTATA 1976
||||||| ||||||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct 1947 GATAGATACATACAAAGGAGTTTCTCAATGAGCACAACAGAGATCATCTTTCGTTTTATA 2006
Query 1977 AAATCATGTAATGTAATGTCTCTGTCTGAACTGTTACTCTTCGGTAACTTTGATGGAGAA 2036
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2007 AT-TCATGTAATGTAATGTCTCTGTCTGAACTGTTACTCTTCGGTAACTCTGATGGAGAA 2065
Query 2037 CTTGTTCTCGTTTTGGTTTGATTTTGTACC-t-tttttttt----G-------G-ATTGC 2082
|||||||||||||||||||||||||||||| | |||||||| | | |||||
Sbjct 2066 CTTGTTCTCGTTTTGGTTTGATTTTGTACCCTCTTTTTTTTTTTTGTTTTTTTGGATTGC 2125
Query 2083 TTTGTCTTTTTATTGGATACTGAAGCATTACTGTATCAAGGCTAATTAGCCCATCAATAA 2142
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2126 TTTGTCTTTG-ATTGGATAATGAAGCATTACTGTATCAAGGCTAATTAGCCCATCAATAA 2184
Query 2143 GCCTTTTATAA-GCTCT 2158
||||||| ||| |||||
Sbjct 2185 GCCTTTT-TAAAGCTCT 2200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107027561940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5