BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939860
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1120 0.0
> AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1323636-1325627 FORWARD LENGTH=874
Length=874
Score = 1120 bits (606), Expect = 0.0
Identities = 678/712 (95%), Gaps = 7/712 (1%)
Strand=Plus/Plus
Query 2 TCTCGCCGACGACGAAAACATGGGTGCCAAGGCGAAGAAAGCTCTGAAGAAGAACATGAA 61
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 46 TCTCGCCGACGACGAAAACATGGGTGCCAAGGCGAAGAAAGCTTTGAAGAAGAACATGAA 105
Query 62 GAAGATTGCTGCTTCGGCTGCTTCTTCTCAGCTACCTCCTCCCCAGAATTCGAAACCTTC 121
|||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||
Sbjct 106 GAAGGTTGCTGCTTCGGCTTCTTCTTCTCAGCTACCTCTTCCCCAGAACCCGAAACCTTC 165
Query 122 AGCTGATTTTTTGCCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTGACCTCCCAACC 181
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 166 AGCTGATTTTTTGCCACTAGAAGGAGGTCCAGCTCGAAAAGCTCCAGTTACCACCCCACC 225
Query 182 TCTTGAGCATAAAGCTACTGTCCTATACATCGGGAGAATCCCTCATGGCTTCTACGAGAC 241
|||| || ||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 226 TCTTCAGAATAAAGCTACTGTGCTATACATCGGTAGAATCCCTCATGGCTTCTATGAGAC 285
Query 242 TGAGATTGAAGCTTTCTTCTCACAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAA 301
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 286 TGAGATTGAAGCTTTCTTCTCGCAGTTTGGAACAGTTAAGAGAGTTAGAGTCGCCAGAAA 345
Query 302 CAAAAAGACTGGCAAGTCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAGGTGGC 361
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CAAAAAGACTGGGAAATCAAAGCATTTTGGGTTCATACAGTTTGAGGACCCTGAGGTGGC 405
Query 362 CGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCACATGCTTAAAGTCCA 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GGAAATTGCAGCGGGTGCAATGAATGATTATTTGTTGATGGAGCACATGCTTAAAGTCCA 465
Query 422 TGTCATTGCACCAGAGGATGTTAAACCCAATCTGTGGAAAGGGTTTAAATGTAACTTCAA 481
|||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 466 TGTCATTGAACCAGAGAATGTTAAACCCAATCTGTGGAGAGGGTTTAAATGTAACTTCAA 525
Query 482 ACCAGTGGATTCAGTTCAGATTGAGCGTAGACAACATAATAAGGAAAGGACATTGGAAGA 541
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 526 ACCAGTGGATTCGGTTCAGATTGAGCGAAGACAACTTAATAAGGAAAGGACATTGGAAGA 585
Query 542 GCATAGGAAAATGTTGCAGAAGGTAGT-AAAAAGGGATCAGAAAAGGAGGAAGAGAATCA 600
|||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct 586 GCATAGGAAAATGTTGCAGAAGATAGTTAAAAAGG-ATCAGAAAAGGAGGAAGAGAATCG 644
Query 601 AAGCCGCTGGAATAGAATATGAATGCCCTGAGCTTGTTGGAAACACACAGCCAGTCCCGA 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAGCCGCTGGAATAGAATACGAATGCCCTGAGCTTGTTGGAAACACACAGCCAGTCCCGA 704
Query 661 AGAGGATCAAGTTTAGTGAAGA---CTAAAAGAC-GAAGCTGAACAACACTT 708
|||||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 705 AGAGGATCAAGTTTAGTGAAGAAGACTAAAAG-CTGAAGCTGAACAACACTT 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5