BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939867

Length=1795
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16550.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   261    2e-68
  AT4G35730.1 | Symbols:  | Regulator of Vps4 activity in the MVB...   183    4e-45


> AT5G16550.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5405350-5406887 
FORWARD LENGTH=1172
Length=1172

 Score =  261 bits (141),  Expect = 2e-68
 Identities = 167/179 (93%), Gaps = 3/179 (2%)
 Strand=Plus/Plus

Query  1426  GTTCGATTTTGTTCCCAAATTCGAAAACTAGTGATGCGTCGTCTTCGTTTCTTGAATGTG  1485
             |||||||| |||| ||| ||||||||||  |||||  | ||||||||||||||||| |||
Sbjct  355   GTTCGATTCTGTTTCCAGATTCGAAAACCGGTGAT--G-CGTCTTCGTTTCTTGAACGTG  411

Query  1486  TAAGAAACTCCGTCGCCGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGAC  1545
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  412   TAAGAAACTCCGTCGCTGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGAC  471

Query  1546  GCGAGATTCTTCTATGGACTCGTAGAAGCAGCTCGCTTCGTGCTCTGCTTGTCATCACt  1604
             ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  472   GCGAGATTCTTCTCTGGACTCGTAGAGGCAGCTCGCTTCGTGCTCTGCTTGTCATCACT  530


> AT4G35730.1 | Symbols:  | Regulator of Vps4 activity in the MVB 
pathway protein | chr4:16931039-16933356 FORWARD LENGTH=1588
Length=1588

 Score =  183 bits (99),  Expect = 4e-45
 Identities = 113/120 (94%), Gaps = 0/120 (0%)
 Strand=Plus/Plus

Query  1613  GCAATGTCTTGTGGATCTTAAGGAAGGTATTGCTAGTTTGATTGTTGCTGCACCTAGATG  1672
             |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct  402   GCAATGTCCTGTGGATCTTAAGGAAGGTATTGCTAGTTTGATTTTTGCTGCGCCTAGATG  461

Query  1673  CTCTGAGATTCCTGAGCTTGGAGATCTTCGAGACATCTTTGAGAAGAAGTATGGGAAAGA  1732
             |||||| ||||||||||||||||||||| |||||||||||| |||||| |||||||||||
Sbjct  462   CTCTGAAATTCCTGAGCTTGGAGATCTTAGAGACATCTTTGCGAAGAAATATGGGAAAGA  521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 88804764105


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5