BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939874 Length=1874 Score E Sequences producing significant alignments: (Bits) Value AT5G04730.1 | Symbols: | Ankyrin-repeat containing protein | c... 1471 0.0 > AT5G04730.1 | Symbols: | Ankyrin-repeat containing protein | chr5:1364101-1367394 REVERSE LENGTH=1903 Length=1903 Score = 1471 bits (796), Expect = 0.0 Identities = 970/1053 (92%), Gaps = 16/1053 (2%) Strand=Plus/Plus Query 810 ATCATGCAAACATATGATCTAAAAGAAAGACATTCTCAAGCTCAAAACTTGCTaaaaaaa 869 |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| || Sbjct 854 ATCAAGCAAACATATGATCTAAAAAAAAGACATTCTCAAGCTCAAAAGTTGCTAAAACAA 913 Query 870 aTGTGCACAGAACTACCAG---GCATGGTCAAGGAC-A-AT-AGTTGGAAAGAGATGGTC 923 ||||||||| ||||| || ||||| |||| || | || || |||||||| | ||| Sbjct 914 ATGTGCACATCACTACGAGATATCATGGCCAAGAACGAGATCAGGTGGAAAGAAACAGTC 973 Query 924 TATGGAGCACTACTTGAAGCGGTGAAGAATGGGAACAAGGAATTTTTCATTGAGATAATC 983 |||| ||||||||||||||||| ||||| |||||||| ||| |||||||| ||||| ||| Sbjct 974 TATGAAGCACTACTTGAAGCGGCGAAGAGTGGGAACAGGGATTTTTTCATCGAGATTATC 1033 Query 984 AAATGTAACCCTCAACTTCTTTGGATCTCGAAAGCTGA-CTCTGGCCGAAACCTCTTTCA 1042 ||||||||| |||||||||||||||||| ||| || | ||||||||||||||||||||| Sbjct 1034 AAATGTAACTCTCAACTTCTTTGGATCTTGAACCCT-ACCTCTGGCCGAAACCTCTTTCA 1092 Query 1043 GCTGGCCGTTGAATTCAAGAAAGATAAGATCTTTAACCTCATACATGGTTTAGATGATAG 1102 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1093 GCTGGCCGTTGAATTCAAGAAAGAGAAGATCTTTAATCTCATACATGGTTTAGATGATAG 1152 Query 1103 AAAGGTCACGCTGCTTAGATCTTACGACAATA-AAAACAACAACATTCTCCATATCGCCG 1161 |||||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||| Sbjct 1153 AAAGGTCACGCTTCTTAGATCTTACGACAA-AGGAAACAATAACATTCTCCATATCGCCG 1211 Query 1162 CTCATCTCTCTACTCCCGACCAACTTTCTAAGATTTCTGGAGCTGCTCTCAAGATGCAAA 1221 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1212 GTCGTCTCTCTACTCCCGACCAACTTTCTAAGATTTCTGGAGCTGCTCTCAAGATGCAAA 1271 Query 1222 GAGAGACTCAATGGTTTAAGGAAGTAAAAAGCTTGGTATCAGAACGTGAAGTAGTGCaaa 1281 ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1272 GAGAGTCTCAATGGTTTAAGGAAGTAGAGAGCTTGGTATCAGAACGTGAAGTAGTGCAAA 1331 Query 1282 aaaaCAACAAGAAGAAGACCCCGCGACAAATATTCGAAGATTCTCACGAAAC-TTTACGA 1340 ||||||| | || |||||||||||||||||||||||| ||| ||||| ||| | ||||| Sbjct 1332 AAAACAAGGACAACAAGACCCCGCGACAAATATTCGAACATTATCACG-AACATCTACGA 1390 Query 1341 AAAGAAGGAGAAGAATGGATGAAATACACTGCCACTGCTTGTAGCTTCGTGGCAGCTCTC 1400 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1391 AAAGAAGGAGAAGAATGGATGAAATACACTGCCACTGCTTGTAGCTTCGTGGCGGCTCTC 1450 Query 1401 ATTGCAACTGTCACTTTTCAAGCCATATTCACTGTTCCTGGAGGTACTGATCAAACTTCG 1460 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1451 ATTGCAACTGTCACTTTTCAAGCCATATTCACTGTTCCTGGAGGTATTGATGGAACTTCG 1510 Query 1461 GGTGCACCTATCCTTCTTCATGACTTACATTTCACG-GGGTTCATCTTCACAAACACTCT 1519 ||| ||||| | ||||| ||||||||||||||| | | |||||| |||||| ||||||| Sbjct 1511 GGTTCACCTCTTATTCTTAATGACTTACATTTCA-GAGCGTTCATTTTCACAGACACTCT 1569 Query 1520 CGCCTTCTTCGCCTCCTGCATCTCTGTGCTCATATTCCTCAACATTCTGACCTCAAGGTA 1579 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 1570 CGCCTTCTTCGCCTCCTGCATCTCTGTGCTCATATTCCTCAGCATTCTGACCTCAAGATA 1629 Query 1580 CTCTTTTGATGACTTCATTGTATCACTTCCTAGAAAGATGATATTGGGTCAATCAATTCT 1639 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1630 CTCTTTTGATGACTTCATTGTATCACTTCCTAGAAAGATGATATTGGGTCAATCCATTCT 1689 Query 1640 GTTTATCTCTATTGCCTCAATGCTTGTTTCATTTATCACGTCCCTTTCCGCGTCAATGCG 1699 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1690 GTTTATCTCTATTGCCTCAATGCTTGTTGCATTTATCACGTCGCTTTCCGCGTCAATGCG 1749 Query 1700 GCACAGGCCAACGCTTGTAGT-CCCACTCAAGCCACTCGCCAGCTTCCCTTCGATTCTCT 1758 |||| |||| |||||||| | |||||| |||||||||||||||||||| ||| |||||| Sbjct 1750 TCACAAGCCAGCGCTTGTA-TACCCACTGAAGCCACTCGCCAGCTTCCCATCGCTTCTCT 1808 Query 1759 TCTTGATGTTGCAATATCCTCTTCTCAAGGAGATGATTTCTTCCACCTATGGCAAACGAC 1818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1809 TCTTGATGTTGCAATATCCTCTTCTCAAGGAGATGATTTCTTCCACCTATGGCAAACGAC 1868 Query 1819 TCTTCTACCGCGATACAAAGAATTGGCTACCAT 1851 | |||||||||||||||||||| |||||||||| Sbjct 1869 TTTTCTACCGCGATACAAAGAACTGGCTACCAT 1901 Score = 549 bits (297), Expect = 3e-155 Identities = 602/740 (81%), Gaps = 57/740 (8%) Strand=Plus/Plus Query 87 GTGCCAGGTTCTTCACAAGGAGTGTC-AGATTTAGGTGAAATTTGTGAATATTTATCATT 145 |||||||||||||| | | | || | || ||||||||||||||||||| |||||||| | Sbjct 71 GTGCCAGGTTCTTCGGACGAAATG-CAAGTTTTAGGTGAAATTTGTGAAAATTTATCACT 129 Query 146 ATCACA-AAACATTAGCGACGATGATTTGGAACACGT-TAAAGTAAAGTTCTCGAACCTG 203 |||||| || |||||||||||||||||||| | ||| |||| ||| |||| ||||||| Sbjct 130 ATCACAGCAA-ATTAGCGACGATGATTTGGAGCGCGTGAAAAG-AAACTTCTTGAACCTG 187 Query 204 CAGAGAGACACAACTACTGCCTGGATCGACCCATTTGAGACACCATTGCAAAACGCATGT 263 |||| ||| |||| |||||||| ||| ||| ||||||||| | ||| |||||| ||||| Sbjct 188 CAGACAGAGACAATTACTGCCTTGATGGACGCATTTGAGATAACATGGCAAAAAACATGT 247 Query 264 AGTCGCCGTCAGTTGGCCGAGATCGTCAAGAAGCTACTATTGCACGAAATGACGAGTCGT 323 ||||| ||||| || | |||||||||||||||||||||||| ||||||||||||||||| Sbjct 248 AGTCGACGTCAATT-G--GAGATCGTCAAGAAGCTACTATTGGACGAAATGACGAGTCGT 304 Query 324 GGCCAAATGGCAAATGACATTTATTGTCAAAGTTTAGCGCTCGATATTGCTGCTGGGAGT 383 |||||||||| ||| || ||||||||||||||||||||||||||||||||| |||| | Sbjct 305 GGCCAAATGGAAAACGATGCTTATTGTCAAAGTTTAGCGCTCGATATTGCTGCCGGGAAT 364 Query 384 GGCAATTTGAAGATGGTTAGGGACCTGTGTGAACTCTATCCCAACCAGCTGCTTGCTCA- 442 |||||||||| || ||| | | | |||||||||| | ||| |||||||| |||||||| Sbjct 365 GGCAATTTGACGAGGGTAAAGCAACTGTGTGAACCCCATCTCAACCAGCCGCTTGCTCGT 424 Query 443 AGATAATTCAGTTTC-CTATGGGCTAGCAATACCGGTTGTGCGGGCATCTAATGCAGGCC 501 | ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| | Sbjct 425 A-ATAATTCAGTT-CGCTATGGGCTAGCTATACCGGTTGTGCGGGCATCTAATGCAGGGC 482 Query 502 ATGGAAAGGTCACTGGCAACCTTTATTTCAA-CA--ATCAGA-ATATACTTCTTCCTATT 557 || ||||||||||| | ||||||||| ||| || || ||| | | |||| || | || Sbjct 483 ATAAAAAGGTCACTGACTACCTTTATTACAATCATTATAAGAGA-ACCCTTCCTCTTGTT 541 Query 558 TTGAAGGAT-A-AACAAGG-ATATTGGGCTACCTGTCTCCTTCTGGATGCCATATTTTAT 614 ||| || || | || | | |||||||||||| ||||||||||| ||||||||||||||| Sbjct 542 TTGGAGAATGATAATGATGTATATTGGGCTACATGTCTCCTTCTCGATGCCATATTTTAT 601 Query 615 GGATTTCTAGCTTGGTTTCATGGGCTGTTAGACATTGCGTTGGACATCATCATAA-ATGT 673 |||||||| | | | | | |||||||||||||||||| | || | Sbjct 602 GGATTTCT---T-G-----A----C----A----TTGCGTTGGACATCATCA-AGCATTT 639 Query 674 ACCGTCTGTGGCCGTGACTAAACACGCAAGTCAAAGATCAACTCCACTTA-A-GTTCTTA 731 |||||||||||||||||||||||||||||| ||||||| | || | ||| | |||| || Sbjct 640 ACCGTCTGTGGCCGTGACTAAACACGCAAGGCAAAGATTACCT--ATTTATAAGTTCATA 697 Query 732 GCTTTGAAACCTGACTTGTTTCATAGCCACTCGGCCCACTCCAATCTTGGATTTTGGCGA 791 ||| ||||||||||| |||||| |||||||| | | | | | ||||||| |||||| Sbjct 698 GCTGTGAAACCTGACCTGTTTCGTAGCCACT-G-CA-A-T----T-TTGGATTCTGGCGA 748 Query 792 CGCTTCATCTACTCTTGTAT 811 | | |||||||||| ||||| Sbjct 749 CACCTCATCTACTCGTGTAT 768 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92770607160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5