BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939874
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04730.1 | Symbols: | Ankyrin-repeat containing protein | c... 1471 0.0
> AT5G04730.1 | Symbols: | Ankyrin-repeat containing protein |
chr5:1364101-1367394 REVERSE LENGTH=1903
Length=1903
Score = 1471 bits (796), Expect = 0.0
Identities = 970/1053 (92%), Gaps = 16/1053 (2%)
Strand=Plus/Plus
Query 810 ATCATGCAAACATATGATCTAAAAGAAAGACATTCTCAAGCTCAAAACTTGCTaaaaaaa 869
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||
Sbjct 854 ATCAAGCAAACATATGATCTAAAAAAAAGACATTCTCAAGCTCAAAAGTTGCTAAAACAA 913
Query 870 aTGTGCACAGAACTACCAG---GCATGGTCAAGGAC-A-AT-AGTTGGAAAGAGATGGTC 923
||||||||| ||||| || ||||| |||| || | || || |||||||| | |||
Sbjct 914 ATGTGCACATCACTACGAGATATCATGGCCAAGAACGAGATCAGGTGGAAAGAAACAGTC 973
Query 924 TATGGAGCACTACTTGAAGCGGTGAAGAATGGGAACAAGGAATTTTTCATTGAGATAATC 983
|||| ||||||||||||||||| ||||| |||||||| ||| |||||||| ||||| |||
Sbjct 974 TATGAAGCACTACTTGAAGCGGCGAAGAGTGGGAACAGGGATTTTTTCATCGAGATTATC 1033
Query 984 AAATGTAACCCTCAACTTCTTTGGATCTCGAAAGCTGA-CTCTGGCCGAAACCTCTTTCA 1042
||||||||| |||||||||||||||||| ||| || | |||||||||||||||||||||
Sbjct 1034 AAATGTAACTCTCAACTTCTTTGGATCTTGAACCCT-ACCTCTGGCCGAAACCTCTTTCA 1092
Query 1043 GCTGGCCGTTGAATTCAAGAAAGATAAGATCTTTAACCTCATACATGGTTTAGATGATAG 1102
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1093 GCTGGCCGTTGAATTCAAGAAAGAGAAGATCTTTAATCTCATACATGGTTTAGATGATAG 1152
Query 1103 AAAGGTCACGCTGCTTAGATCTTACGACAATA-AAAACAACAACATTCTCCATATCGCCG 1161
|||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct 1153 AAAGGTCACGCTTCTTAGATCTTACGACAA-AGGAAACAATAACATTCTCCATATCGCCG 1211
Query 1162 CTCATCTCTCTACTCCCGACCAACTTTCTAAGATTTCTGGAGCTGCTCTCAAGATGCAAA 1221
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 GTCGTCTCTCTACTCCCGACCAACTTTCTAAGATTTCTGGAGCTGCTCTCAAGATGCAAA 1271
Query 1222 GAGAGACTCAATGGTTTAAGGAAGTAAAAAGCTTGGTATCAGAACGTGAAGTAGTGCaaa 1281
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1272 GAGAGTCTCAATGGTTTAAGGAAGTAGAGAGCTTGGTATCAGAACGTGAAGTAGTGCAAA 1331
Query 1282 aaaaCAACAAGAAGAAGACCCCGCGACAAATATTCGAAGATTCTCACGAAAC-TTTACGA 1340
||||||| | || |||||||||||||||||||||||| ||| ||||| ||| | |||||
Sbjct 1332 AAAACAAGGACAACAAGACCCCGCGACAAATATTCGAACATTATCACG-AACATCTACGA 1390
Query 1341 AAAGAAGGAGAAGAATGGATGAAATACACTGCCACTGCTTGTAGCTTCGTGGCAGCTCTC 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1391 AAAGAAGGAGAAGAATGGATGAAATACACTGCCACTGCTTGTAGCTTCGTGGCGGCTCTC 1450
Query 1401 ATTGCAACTGTCACTTTTCAAGCCATATTCACTGTTCCTGGAGGTACTGATCAAACTTCG 1460
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1451 ATTGCAACTGTCACTTTTCAAGCCATATTCACTGTTCCTGGAGGTATTGATGGAACTTCG 1510
Query 1461 GGTGCACCTATCCTTCTTCATGACTTACATTTCACG-GGGTTCATCTTCACAAACACTCT 1519
||| ||||| | ||||| ||||||||||||||| | | |||||| |||||| |||||||
Sbjct 1511 GGTTCACCTCTTATTCTTAATGACTTACATTTCA-GAGCGTTCATTTTCACAGACACTCT 1569
Query 1520 CGCCTTCTTCGCCTCCTGCATCTCTGTGCTCATATTCCTCAACATTCTGACCTCAAGGTA 1579
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1570 CGCCTTCTTCGCCTCCTGCATCTCTGTGCTCATATTCCTCAGCATTCTGACCTCAAGATA 1629
Query 1580 CTCTTTTGATGACTTCATTGTATCACTTCCTAGAAAGATGATATTGGGTCAATCAATTCT 1639
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1630 CTCTTTTGATGACTTCATTGTATCACTTCCTAGAAAGATGATATTGGGTCAATCCATTCT 1689
Query 1640 GTTTATCTCTATTGCCTCAATGCTTGTTTCATTTATCACGTCCCTTTCCGCGTCAATGCG 1699
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1690 GTTTATCTCTATTGCCTCAATGCTTGTTGCATTTATCACGTCGCTTTCCGCGTCAATGCG 1749
Query 1700 GCACAGGCCAACGCTTGTAGT-CCCACTCAAGCCACTCGCCAGCTTCCCTTCGATTCTCT 1758
|||| |||| |||||||| | |||||| |||||||||||||||||||| ||| ||||||
Sbjct 1750 TCACAAGCCAGCGCTTGTA-TACCCACTGAAGCCACTCGCCAGCTTCCCATCGCTTCTCT 1808
Query 1759 TCTTGATGTTGCAATATCCTCTTCTCAAGGAGATGATTTCTTCCACCTATGGCAAACGAC 1818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 TCTTGATGTTGCAATATCCTCTTCTCAAGGAGATGATTTCTTCCACCTATGGCAAACGAC 1868
Query 1819 TCTTCTACCGCGATACAAAGAATTGGCTACCAT 1851
| |||||||||||||||||||| ||||||||||
Sbjct 1869 TTTTCTACCGCGATACAAAGAACTGGCTACCAT 1901
Score = 549 bits (297), Expect = 3e-155
Identities = 602/740 (81%), Gaps = 57/740 (8%)
Strand=Plus/Plus
Query 87 GTGCCAGGTTCTTCACAAGGAGTGTC-AGATTTAGGTGAAATTTGTGAATATTTATCATT 145
|||||||||||||| | | | || | || ||||||||||||||||||| |||||||| |
Sbjct 71 GTGCCAGGTTCTTCGGACGAAATG-CAAGTTTTAGGTGAAATTTGTGAAAATTTATCACT 129
Query 146 ATCACA-AAACATTAGCGACGATGATTTGGAACACGT-TAAAGTAAAGTTCTCGAACCTG 203
|||||| || |||||||||||||||||||| | ||| |||| ||| |||| |||||||
Sbjct 130 ATCACAGCAA-ATTAGCGACGATGATTTGGAGCGCGTGAAAAG-AAACTTCTTGAACCTG 187
Query 204 CAGAGAGACACAACTACTGCCTGGATCGACCCATTTGAGACACCATTGCAAAACGCATGT 263
|||| ||| |||| |||||||| ||| ||| ||||||||| | ||| |||||| |||||
Sbjct 188 CAGACAGAGACAATTACTGCCTTGATGGACGCATTTGAGATAACATGGCAAAAAACATGT 247
Query 264 AGTCGCCGTCAGTTGGCCGAGATCGTCAAGAAGCTACTATTGCACGAAATGACGAGTCGT 323
||||| ||||| || | |||||||||||||||||||||||| |||||||||||||||||
Sbjct 248 AGTCGACGTCAATT-G--GAGATCGTCAAGAAGCTACTATTGGACGAAATGACGAGTCGT 304
Query 324 GGCCAAATGGCAAATGACATTTATTGTCAAAGTTTAGCGCTCGATATTGCTGCTGGGAGT 383
|||||||||| ||| || ||||||||||||||||||||||||||||||||| |||| |
Sbjct 305 GGCCAAATGGAAAACGATGCTTATTGTCAAAGTTTAGCGCTCGATATTGCTGCCGGGAAT 364
Query 384 GGCAATTTGAAGATGGTTAGGGACCTGTGTGAACTCTATCCCAACCAGCTGCTTGCTCA- 442
|||||||||| || ||| | | | |||||||||| | ||| |||||||| ||||||||
Sbjct 365 GGCAATTTGACGAGGGTAAAGCAACTGTGTGAACCCCATCTCAACCAGCCGCTTGCTCGT 424
Query 443 AGATAATTCAGTTTC-CTATGGGCTAGCAATACCGGTTGTGCGGGCATCTAATGCAGGCC 501
| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 425 A-ATAATTCAGTT-CGCTATGGGCTAGCTATACCGGTTGTGCGGGCATCTAATGCAGGGC 482
Query 502 ATGGAAAGGTCACTGGCAACCTTTATTTCAA-CA--ATCAGA-ATATACTTCTTCCTATT 557
|| ||||||||||| | ||||||||| ||| || || ||| | | |||| || | ||
Sbjct 483 ATAAAAAGGTCACTGACTACCTTTATTACAATCATTATAAGAGA-ACCCTTCCTCTTGTT 541
Query 558 TTGAAGGAT-A-AACAAGG-ATATTGGGCTACCTGTCTCCTTCTGGATGCCATATTTTAT 614
||| || || | || | | |||||||||||| ||||||||||| |||||||||||||||
Sbjct 542 TTGGAGAATGATAATGATGTATATTGGGCTACATGTCTCCTTCTCGATGCCATATTTTAT 601
Query 615 GGATTTCTAGCTTGGTTTCATGGGCTGTTAGACATTGCGTTGGACATCATCATAA-ATGT 673
|||||||| | | | | | |||||||||||||||||| | || |
Sbjct 602 GGATTTCT---T-G-----A----C----A----TTGCGTTGGACATCATCA-AGCATTT 639
Query 674 ACCGTCTGTGGCCGTGACTAAACACGCAAGTCAAAGATCAACTCCACTTA-A-GTTCTTA 731
|||||||||||||||||||||||||||||| ||||||| | || | ||| | |||| ||
Sbjct 640 ACCGTCTGTGGCCGTGACTAAACACGCAAGGCAAAGATTACCT--ATTTATAAGTTCATA 697
Query 732 GCTTTGAAACCTGACTTGTTTCATAGCCACTCGGCCCACTCCAATCTTGGATTTTGGCGA 791
||| ||||||||||| |||||| |||||||| | | | | | ||||||| ||||||
Sbjct 698 GCTGTGAAACCTGACCTGTTTCGTAGCCACT-G-CA-A-T----T-TTGGATTCTGGCGA 748
Query 792 CGCTTCATCTACTCTTGTAT 811
| | |||||||||| |||||
Sbjct 749 CACCTCATCTACTCGTGTAT 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92770607160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5