BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939877
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04760.1 | Symbols: | Duplicated homeodomain-like superfami... 941 0.0
> AT5G04760.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr5:1373530-1374787 REVERSE LENGTH=1128
Length=1128
Score = 941 bits (509), Expect = 0.0
Identities = 612/660 (93%), Gaps = 14/660 (2%)
Strand=Plus/Plus
Query 17 GATTATGGCGTCAAGTCAGTGGACGAGGTCGGAGGATAAGATGTTTGAGCAAGCTTTGGT 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GATTATGGCGTCAAGTCAGTGGACGAGGTCGGAGGATAAGATGTTTGAGCAAGCTTTGGT 314
Query 77 TCTTTTTCCTGAAGGATCTCCTAATCGGTGGGAGAGAATCGCTGATCAGCTTCATAAATC 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TCTTTTTCCTGAAGGATCTCCTAATCGGTGGGAGAGAATCGCTGATCAGCTTCATAAATC 374
Query 137 TGCTGGTGAAGTTAGGGAGCATTACGAGG-CGTTGGTTCATGATGTTTTCGAGATTGATT 195
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 375 TGCTGGTGAAGTTAGGGAGCATTACGAGGTC-TTGGTTCATGATGTTTTCGAGATTGATT 433
Query 196 CTGGTCGAGTTGATGTCCCCGATTACATGGATGA--------CT-CGGCGGCGGGTTGGG 246
||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 434 CTGGTCGAGTTGATGTCCCTGATTACATGGATGACTCGGCGGCTGCGGCGGCGGGTTGGG 493
Query 247 ATTCGGCTGGTCAGATCTCGTTTGGGTCTAAACATGGTGAGAGTGAACGCAAAAGAGGAA 306
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 494 ATTCCGCTGGTCAGATCTCTTTTGGGTCTAAACATGGCGAGAGTGAACGCAAAAGAGGAA 553
Query 307 CTCCTTGGACGGAGAACGAACACAAATTGTTTCTGATTGGGTTGAAGAGATATGGTAAAG 366
|||||||||| |||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct 554 CTCCTTGGACAGAGAACGAACACAAATTGTTTCTGATCGGATTAAAGAGATATGGTAAGG 613
Query 367 GAGATTGGAGGAGTATCTCGAGGAACGTGGTTGTGACGAGGACGCCGACGCAGGTCGCTA 426
|||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| |
Sbjct 614 GAGATTGGAGGAGTATCTCGAGAAACGTTGTGGTGACGAGGACACCGACGCAAGTCGCGA 673
Query 427 GTCACGCACAGAAGTATTTTCTGAGACAGAACTCGGTGAAGAAGGAGAGGAAAAGGTCGA 486
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GTCACGCTCAGAAGTATTTTCTGAGACAGAACTCGGTGAAGAAGGAGAGGAAAAGGTCGA 733
Query 487 GCATCCATGATATCACTACGGTTGATACTACTTTAGCTATGCCTGGGTCTACCATGGACT 546
||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 734 GCATCCATGATATAACTACGGTTGATGCTACTTTGGCTATGCCTGGGTCTAACATGGACT 793
Query 547 GGACTGGACAGCATGAGAGTCCTGTTCAGGCACAACCGCAGCAACAGATTATGTCTGAGT 606
||||||| || || | ||||||||||||||| | | |||||||||||||||||||||||
Sbjct 794 GGACTGGCCAACACGGGAGTCCTGTTCAGGCGCCGCAGCAGCAACAGATTATGTCTGAGT 853
Query 607 TTGGTCAGCAGTTGACTACTCCTGGTCATTTTGAGGATTTCGGTTTTCGGATGTGAAGAA 666
| |||||||| |||| | |||||||||||| |||||||| || |||||||||||| |||
Sbjct 854 TCGGTCAGCAATTGA--A-TCCTGGTCATTTCGAGGATTTTGGGTTTCGGATGTGATGAA 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33003834579
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5