BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939879
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04780.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2926 0.0
> AT5G04780.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:1384540-1386447 FORWARD LENGTH=1908
Length=1908
Score = 2926 bits (1584), Expect = 0.0
Identities = 1811/1920 (94%), Gaps = 18/1920 (1%)
Strand=Plus/Plus
Query 26 ATGTTGTCGCTTTCGCTGCCAAGTAAGAACATTCTTGGTTTCACGGCGAACTTCTTGATC 85
|||||||| | |||||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 1 ATGTTGTCTCCTTCGCTGCCAAGGATGAACATTCTTGGTTTCACGGTGAACTTCTTGATC 60
Query 86 CGATGC-AAGATCTTACCCAGAAGAAGCAATACGAGTTCTCTCTCCCGAAACATCTCCGT 144
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATGCAAAG-TCTTACCCAGAAGAAGCAATACGAGTTCTCTCTCCCGAAACATCTCCGT 119
Query 145 ATTCGCCAGTTATGAGCAGGAGGAATTATCACCGGGACGATATAGCGATGAG-TTT--AA 201
| ||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||| ||
Sbjct 120 ACTCGCCAGTTATGATCAGGAGGAAGTATCACCGGGACGATATAGCAATGAGTTTTCGAA 179
Query 202 TGTGGTTCAAGCTTCTGACTTTATCGAAATTTTGCAGCTTTGTGCTAGAAACGGAGCTGT 261
| | | || | | || | | ||||||||| ||||||||||||||||||||||||||
Sbjct 180 --TCG-T-AA-C-T-TG-GTGCA-CGAAATTTTACAGCTTTGTGCTAGAAACGGAGCTGT 230
Query 262 TATGGAAGCAAAAGCTTGCCATGGGAAAATTATGCGTATGGAGTTGCAGGGAGATGTCAC 321
||||||||||||||||||||||||||| ||||| ||||| || ||| |||||||||| ||
Sbjct 231 TATGGAAGCAAAAGCTTGCCATGGGAAGATTATTCGTATTGATTTGGAGGGAGATGTTAC 290
Query 322 TCTGTCAAATGTTCTTATTAATGCTTATTCCAAGTGTGGTTTTGTGGAGCTTGCTCGCCA 381
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 291 TCTGTTGAATGTTCTTATTAATGCTTATTCCAAGTGTGGTTTTGTGGAGCTTGCCCGCCA 350
Query 382 AGTGTTTGATGGAATGCTTGAAAGAAGCTTGGTTTCTTGGAACACCATGATTGGTTTGTA 441
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 351 AGTGTTTGATGGAATGCTTGAGAGAAGCTTGGTTTCTTGGAACACCATGATTGGTTTGTA 410
Query 442 TACACGGAACAGAATGGAGTCAGAAGCATTGGATATTTT-TTGGGAGATGAGAAACGAAG 500
||||||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 411 TACACGGAATAGAATGGAGTCAGAAGCATTGGATATTTTCTT-GGAGATGCGAAACGAAG 469
Query 501 GGTTTAAGTTTAGCGAATTCACGATATCGAGTGTTCTTTCTGCTTGTGGGGCAAATTGTG 560
||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 470 GGTTTAAGTTTAGTGAATTCACTATATCGAGTGTTCTTTCTGCTTGTGGGGTAAATTGTG 529
Query 561 ATGCCTTGGAATGCAAAAAATTGCATTCTTTGTCAGTTAAGACATGTCTTGACTTGAACT 620
||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 530 ATGCCTTGGAATGCAAAAAATTGCATTGTTTGTCAGTGAAGACATGTATTGACTTGAACT 589
Query 621 TGTATGTTGGTACTGCTTTGCTTGATCTTTACGCAAAATGTGGCATGATCAACGATGCAG 680
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 590 TGTATGTTGGTACTGCTTTGCTTGATCTTTACGCAAAATGTGGGATGATCAAGGATGCAG 649
Query 681 TGCAGGTTTTCGAGTCTATGCAGGACAAGAGTTCAGTTACATGGAGTTCTATGGTAGCAG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 650 TGCAGGTTTTCGAGTCTATGCAGGACAAGAGTTCAGTTACATGGAGTTCTATGGTGGCAG 709
Query 741 GTTATGTTCAGAGCAAAAACTATGAAGAGGCTCTCCTTCTTTACCGTCGAGCTCAAAGAA 800
|||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 710 GTTATGTTCAGAACAAGAATTATGAAGAGGCACTCCTTCTTTACCGTCGAGCTCAGAGAA 769
Query 801 TGAGTTTAGAGCAGAATCAGTTTACATTATCTTCAGTAATTTGCGCTTGTTCAAATCTGG 860
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 770 TGAGTTTAGAGCAGAATCAGTTCACATTATCTTCAGTAATTTGCGCTTGTTCAAATCTGG 829
Query 861 CAGCTTTAATAGAAGGGAAACAGATGCATGCTGTTATACGTAAGTCCGGGTTTGGTTCTA 920
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 830 CAGCTTTAATAGAAGGGAAACAGATGCATGCTGTTATATGTAAGTCCGGGTTTGGTTCTA 889
Query 921 ATGTCTTTGTGGCATCCTCTGCAGTTGATATGTATGCTAAATGTGGAAGCTTGAGAGAGT 980
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 890 ATGTCTTTGTGGCATCCTCTGCAGTAGATATGTATGCTAAATGTGGAAGCTTGAGAGAGT 949
Query 981 CTTATATTATCTTCTCGGAAGTGAAAGAGAAGAATATTGAGCTTTGGAATACGATCATCT 1040
|||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 950 CTTATATTATTTTCTCGGAAGTGCAAGAGAAGAATCTTGAGCTTTGGAACACGATCATCT 1009
Query 1041 CGGGGTTTGCAAAGCATGCTCGTCCTAAGGAAGTGATGATCTTGTTTGAGAAAATGCAGC 1100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1010 CGGGGTTTGCAAAGCATGCTCGTCCTAAGGAAGTGATGATCTTGTTTGAGAAAATGCAAC 1069
Query 1101 AAGATGGAATGCACCCAAATGAGGTTACTTTTAGTTCCCTGTTATCGGTTTGTGGTCACA 1160
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1070 AAGATGGAATGCACCCAAATGAGGTTACTTTTAGTTCCTTGTTATCGGTTTGTGGTCACA 1129
Query 1161 CGGGTTTGGTCGAGGAAGGAAGGAGATTTTTCAAACTCATGAGAACCACATACGGTCTGT 1220
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1130 CGGGTTTGGTCGAGGAAGGAAGGAGATTTTTCAAACTCATGAGAACCACTTACGGTCTGT 1189
Query 1221 CACCAAATGTGGTTCATTACTCCTGTATGGTTGATATTCTTGGTCGTGCTGGCCTATTGT 1280
| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1190 CGCCTAATGTGGTTCATTACTCATGTATGGTTGATATTCTTGGTCGTGCTGGTCTATTGT 1249
Query 1281 CTGAAGCGTACGAGTTGATAAAGTCTATTCCTTTCGAGCCTACAGCTTCCATTTGGGGTT 1340
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1250 CTGAAGCGTACGAGTTGATAAAGTCTATTCCTTTCGATCCTACAGCTTCCATTTGGGGTT 1309
Query 1341 CTCTTCTTGCTTCATGTCGAGTTTACAAAAACCTCGAGCTGGCTGAAGTTGCAGCCAAAA 1400
||||||| ||||| |||||||| |||||||| ||||||||||| |||||||||||| | |
Sbjct 1310 CTCTTCTAGCTTCTTGTCGAGTCTACAAAAATCTCGAGCTGGCAGAAGTTGCAGCCGAGA 1369
Query 1401 AATTATTCGAATTAGAACCAGAAAATGCCGGTAATCACGTCTTACTATCCAATATATATG 1460
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1370 AACTATTCGAATTAGAACCAGAAAACGCCGGTAATCACGTCTTACTATCCAATATATACG 1429
Query 1461 CGGCAAACAAACAGTGGGAGGAAATCGCCAAATCAAGGAAGCTTCTAAGGGACTGCGACG 1520
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1430 CGGCAAACAAACAGTGGGAGGAAATCGCCAAGTCAAGGAAGCTTTTAAGGGACTGCGACG 1489
Query 1521 TGAAAAAAGTAAGAGGACAAAGTTGGATTGACATTAAGGACAAGGTCCACATTTTCCGTG 1580
|||| |||||||||||| ||||||||||||||||||| ||||||||||| | |||| |||
Sbjct 1490 TGAAGAAAGTAAGAGGAAAAAGTTGGATTGACATTAAAGACAAGGTCCATACTTTCAGTG 1549
Query 1581 TTGGAGAAAGCAGTCATCCGAGAATCCGTGAGATCTGTTCGATGCTAGACAATCTAGTTA 1640
||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1550 TTGGAGAGAGCGGTCATCCGAGAATCCGTGAGATCTGTTCGACGCTAGACAATCTAGTAA 1609
Query 1641 TCGAATTGAGAAAGTTTGGATATAAACCAAGCGTAGAACACGAGCTGCACGATGTGGAGA 1700
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TCAAATTCAGAAAGTTTGGATATAAACCAAGCGTAGAACACGAGCTGCACGATGTGGAGA 1669
Query 1701 TAGGAAAGAAAGAGAAGCTTTTGATGCAACATAGTGAGAAACTGGCTTTGGTTTTTGG-T 1759
|||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 1670 TAGGAAAGAAAGAGGAGCTTTTGATGCAGCATAGTGAGAAGCTGGCATTGGTTTTTGGGT 1729
Query 1760 CTAATGTGTTTACCAGAGGGTTCTACAGTGAGGATCATGAAGAATCTGAGGATTTGTGTT 1819
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct 1730 -TAATGTGTTTACCAGAGAGTTCTCCAGTGAGGATTATGAAGAATCTGAGGATTTGTGTG 1788
Query 1820 GATTGCCATGAGTTTATGAAGGCTGCTTCAATGGCTACAAGAAGATTTATCATTGTTAGA 1879
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1789 GATTGCCATGAGTTCATGAAGGCTGCATCAATGGCTACAAGAAGATTTATCATTGTTAGA 1848
Query 1880 GATGCTAATAGGTTTCACCATTTCAGTGATGGTCATTGTTCTTGTGGCGAATTTTGGTGA 1939
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1849 GATGTTAATAGGTTTCACCATTTCAGTGATGGTCATTGTTCTTGTGGCGATTTTTGGTGA 1908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5