BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939883
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04820.1 | Symbols: ATOFP13, OFP13 | ovate family protein 13... 1225 0.0
> AT5G04820.1 | Symbols: ATOFP13, OFP13 | ovate family protein
13 | chr5:1399619-1400784 FORWARD LENGTH=1166
Length=1166
Score = 1225 bits (663), Expect = 0.0
Identities = 768/816 (94%), Gaps = 17/816 (2%)
Strand=Plus/Plus
Query 13 TGGTTTCAATGGGGAAGAAGAAGATGAAGCTCTCTTCTCTGTTCAAAGGCGGAGCCGGAG 72
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 59 TGGTATCAATGGGGAAGAAGAAGATGAAACTCTCTTCTCTGTTCAAAGGCGGAGCCGGAG 118
Query 73 GATTACTGGCGGTTCCTCTCTGTTACAATGCCAAAACTCTCTCCTTCCGTGTCGGCGACG 132
||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 119 GATTACTAGCGGTTCCTCTCTGTTACAATGCCAAAACTCTTTCGTTCCGAGTCGGCGACG 178
Query 133 ACATGATCAAGACGGTGAACTCTGTTTTCTTCGACCA-CA--AC--C-ACAACAATGGAG 186
||||||||||||||||||||||||||||||||||||| || || | ||||||||||||
Sbjct 179 ACATGATCAAGACGGTGAACTCTGTTTTCTTCGACCACCACCACAACAACAACAATGGAG 238
Query 187 GAGATTTGTTGGAAGCGGAAACGCCTGAGTCATGGTTTACTAACTCGTCTGAGACAGCGA 246
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 GAGATTTGTTGGAAGCGGAGACGCCTGAGTCATGGTTTACTAACTCGTCCGAGACAGCGA 298
Query 247 GTCACTCAACCGAGTCGGATCAAGACCTTGACGCTGAATCGTTGGAGATGGTGGTTCGTG 306
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 299 GTCACTCAACCGAGTCGGATCAAGACCTTGACGCTGAGTCCTTAGAGATGGTGGTTCGTG 358
Query 307 GAGTTGTTAGATCGGAGCGGTTGTTCTTCGATCCAGGAGTTACGAGTTCGATTTTGGAAG 366
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 359 GCGTTGTTAGATCGGAGCGGTTATTCTTCGATCCAGGAGTTACGAGTTCGATTCTGGAAG 418
Query 367 AGATTGATGATAAATCGAAATC------GAAATCGAAGGAGACTGTTGCGGCGGGAGAAG 420
||||||| || ||||||||||| |||||||||||| || ||||||| ||||||||
Sbjct 419 AGATTGAAGAGAAATCGAAATCGGATTTGAAATCGAAGGAAACGGTTGCGGTGGGAGAAG 478
Query 421 ATCGGGGTACGCCGATTGAGGAGATTAGCGTCGCGGTGGCGATGGAATCGGAGGATCCGT 480
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 479 ATCGGAGTACGCCGATTGAGGAGATTAGTGTCGCGGTGGCGATGGAATCCGAGGATCCGT 538
Query 481 ACGGTGATTTCCGGCGATCGATGGAGGAGATGGTGACGAGTCACGGTGAGTTAGCTAAAG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 ACGGTGATTTCCGGCGATCGATGGAGGAGATGGTGACGAGTCACGGTGAGTTGGCTAAAG 598
Query 541 ATTGGGAGAGTTTGGAATCGATGCTCGCTTGGTACTTGAGGATGAATGGGAGGAAGAGTC 600
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 599 ATTGGGAGAGCTTGGAATCGATGCTCGCTTGGTATTTGAGGATGAATGGGAGGAAGAGTC 658
Query 601 ACGGCGTAATCGTCAGTGCTTTTGTTGATCTTCTCTCTGGACTCTCTGATTCCGGCGCCG 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACGGCGTTATCGTCAGTGCTTTTGTTGATCTTCTCTCTGGACTCTCTGATTCCGGCGCCG 718
Query 661 GAATAGCGTCGGCGTCGGTATCGGATTCGGCTCGTTATTCAACCGCCGTTTCGTCTTTGC 720
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAATAACGTCGGCTTCGGTATCGGATTCGGCTCGTTATTCAACCGCCGTTTCGTCTTTGC 778
Query 721 CGTCGTCGCCGGTATATTCGTTATCTCAAGGTCAGACGGAGATTGAAGAGGAAGAGAGAC 780
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 CGTCGTCGCCGGTTTATTCGTTATCTCAAGGTCAGACGGAGATTCAAGAGGAAGAGAGAC 838
Query 781 GGAGCTGTTAGAAATAAA----G-CTTAAGATTCGG 811
|||||||||| ||||||| | ||||||||||||
Sbjct 839 GGAGCTGTTAAAAATAAAAAAAGGCTTAAGATTCGG 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5