BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939886

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G12120.1 | Symbols: SEC1B, ATSEC1B | Sec1/munc18-like (SM) p...   412    1e-114


> AT4G12120.1 | Symbols: SEC1B, ATSEC1B | Sec1/munc18-like (SM) 
proteins superfamily | chr4:7256538-7261180 REVERSE LENGTH=2404
Length=2404

 Score =  412 bits (223),  Expect = 1e-114
 Identities = 235/241 (98%), Gaps = 0/241 (0%)
 Strand=Plus/Plus

Query  76    GTGAAAGATTGCATGAAAAGATGACAAACTTCGTGTCGAAGAACAAAGCTGCGCAATTGA  135
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1246  GTGAAAGATTGCATGAAAAGATGACAAACTTCGTGTCGAAGAACAAAGCTGCGCAATTGA  1305

Query  136   AACACAGTTCAAAAGACTTTGGTGACCTTTCATCAAAAGACTTGCAGAAGATGATTCACA  195
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  1306  AACACAGTTCAAAAGACTTTGGTGACCTTTCATCAAAAGACTTGCAGAAGATGGTTCACG  1365

Query  196   CTTTGCCTCAGTACAGTGAGCAAATTGACAAGCTTTCTCTACATGTAGAGATTGCTAGAA  255
             |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  1366  CTTTGCCTCAGTACAGTGAGCAAATTGACAAGCTTTCTCTACATGTTGAGATCGCTAGAA  1425

Query  256   CAATTAACAAAACTATCATGGAACAAGGTCTAAGAGATCTCGGGCAGCTCGAGCAGGACC  315
             |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1426  CAATAAACAGAACTATCATGGAACAAGGTCTAAGAGATCTCGGGCAGCTCGAGCAGGACC  1485

Query  316   T  316
             |
Sbjct  1486  T  1486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5