BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939889
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04870.1 | Symbols: CPK1, ATCPK1 | calcium dependent protein... 3166 0.0
AT3G10660.1 | Symbols: CPK2, ATCPK2 | calmodulin-domain protein... 1740 0.0
> AT5G04870.1 | Symbols: CPK1, ATCPK1 | calcium dependent protein
kinase 1 | chr5:1416783-1420338 REVERSE LENGTH=2526
Length=2526
Score = 3166 bits (1714), Expect = 0.0
Identities = 1824/1877 (97%), Gaps = 7/1877 (0%)
Strand=Plus/Plus
Query 1 AGAGA-TTAAGAGAAGTTTA--G-ATGGGTAATACTTGTGTTGGACCAAGCAGAAATGGC 56
||||| |||||| ||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 439 AGAGATTTAAGACAAG-TTAGGGAATGGGTAATACTTGTGTTGGACCAAGCAGAAATGGC 497
Query 57 TTCTTGCAATCAGTTTCAGCTGCAATGTGGCGGCCAAGAGATGGAGATGATTCGGCTTCC 116
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TTCTTGCAATCTGTTTCAGCTGCAATGTGGCGGCCAAGAGATGGAGATGATTCGGCTTCC 557
Query 117 ATGAGTAATGGAGATATTGCAAGTGAAGCTGTTTCAGGAGAGCTTCGATCTCGATTATCT 176
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 558 ATGAGTAATGGAGATATTGCAAGTGAAGCTGTTTCGGGAGAGCTTCGATCTCGATTATCT 617
Query 177 GATGAAGTCCAGAATAAACCTCCTGAACAGGTCACAATGCCGAAGCCAGGGACTAACATC 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 618 GATGAAGTCCAGAATAAACCTCCTGAACAGGTCACAATGCCGAAGCCAGGGACTGACGTC 677
Query 237 GAGACCAAGGACAGAGAGATTCGACCTGAAAGCAAGCCTCAAGCGCTAGAGGAGATAAAA 296
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 678 GAGACCAAGGACAGAGAGATTCGAACTGAAAGCAAGCCTGAAACGCTAGAGGAGATAAGC 737
Query 297 CTTGAGTCCAAACCAGAGACTAAGCAGGAGACCAAGTCAGAGACCAATCCGGAGACAAAA 356
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 738 CTTGAGTCCAAACCAGAGACTAAGCAGGAGACCAAGTCAGAGACCAAGCCGGAGTCAAAA 797
Query 357 CCTGATCCTCCAGCTAAACCTAAGAAGCCTAAACACATGAAGAGAGTGTCAAGTGCAGGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 CCTGATCCTCCAGCTAAACCTAAGAAGCCTAAACACATGAAGAGAGTGTCAAGTGCAGGG 857
Query 417 CTTAGGACTGAGTCAGTATTGCAGAGGAAGACTGAAAACTTCAAGGAATTCTATTCCTTG 476
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 CTTAGGACTGAGTCAGTGTTGCAGAGGAAGACTGAAAACTTCAAGGAATTCTATTCCTTG 917
Query 477 GGAAGGAAACTCGGACAAGGGCAATTTGGGACGACTTTTCTATGTGTGGAGAAGACTACA 536
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 918 GGAAGGAAACTCGGACAAGGGCAATTTGGGACGACTTTTTTATGTGTCGAGAAGACTACG 977
Query 537 GGGAAGGAGTTTGCATGCAAGTCGATTGCTAAGAGGAAGCTGTTGACTGATGAGGACGTT 596
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 978 GGGAAGGAGTTTGCCTGCAAGTCGATTGCTAAGAGGAAGCTATTGACTGATGAGGACGTT 1037
Query 597 GAGGATGTGAGAAGGGAAATTCAGATAATGCATCACTTGGCTGGTCACCCCAATGTCATA 656
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1038 GAGGATGTGAGAAGAGAAATTCAGATAATGCATCACTTGGCTGGTCACCCTAATGTCATC 1097
Query 657 TCCATTAAAGGAGCTTATGAGGATGTTGTGGCGGTGCACCTTGTAATGGAGTGTTGTGCA 716
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1098 TCCATCAAAGGAGCTTATGAGGATGTTGTGGCAGTGCACCTTGTAATGGAGTGTTGTGCA 1157
Query 717 GGTGGCGAGCTTTTTGACAGGATCATTCAACGCGGTCACTACACAGAGAGGAAAGCGGCT 776
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GGCGGCGAGCTTTTTGACAGGATCATTCAACGCGGTCACTACACAGAGAGGAAAGCGGCT 1217
Query 777 GAGCTCACTAGAACAATAGTTGGGGTAGTAGAGGCTTGCCATTCTCTTGGTGTTATGCAT 836
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1218 GAGCTCACTAGAACCATTGTTGGGGTTGTAGAGGCTTGCCATTCTCTTGGTGTTATGCAT 1277
Query 837 CGAGACCTCAAGCCCGAGAATTTTCTGTTTGTTAGTAAACACGAAGATTCCCTCTTGAAG 896
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1278 CGAGACCTCAAGCCCGAGAATTTTCTGTTTGTCAGTAAACACGAAGATTCCCTCTTGAAG 1337
Query 897 ACGATTGATTTTGGACTCTCCATGTTCTTTAAGCCAGACGATGTTTTTACAGATGTTGTT 956
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1338 ACGATTGATTTTGGACTCTCCATGTTCTTTAAACCAGACGATGTTTTTACAGATGTTGTT 1397
Query 957 GGTAGCCCATATTATGTTGCTCCAGAAGTTCTTCGAAAGCGTTATGGCCCTGAAGCTGAT 1016
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GGTAGCCCATATTATGTTGCCCCAGAAGTTCTTCGAAAGCGTTATGGCCCTGAAGCTGAT 1457
Query 1017 GTCTGGAGTGCTGGAGTGATTGTGTACATTTTATTAAGCGGAGTTCCTCCATTCTGGGCT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 GTCTGGAGTGCTGGAGTGATTGTGTACATTTTATTAAGCGGAGTTCCTCCATTCTGGGCT 1517
Query 1077 GAAACCGAACAAGGTATTTTCGAACAGGTCCTCCACGGTGATCTTGACTTTTCGTCCGAT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GAAACCGAACAAGGTATTTTCGAACAGGTCCTCCACGGTGATCTTGACTTTTCGTCCGAT 1577
Query 1137 CCATGGCCAAGCATATCTGAAAGTGCAAAGGATTTAGTGAGGAAAATGCTTGTCAGGGAT 1196
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 CCATGGCCAAGTATATCTGAAAGTGCAAAGGATTTAGTGAGGAAAATGCTTGTCAGGGAT 1637
Query 1197 CCCAAGAAAAGGTTAACTGCCCACCAAGTATTATGTCATCCGTGGGTTCAAGTCGACGGC 1256
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1638 CCCAAGAAAAGGTTAACTGCCCACCAAGTATTATGTCATCCATGGGTTCAAGTCGACGGT 1697
Query 1257 GTGGCTCCAGACAAGCCTTTGGATTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCA 1316
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1698 GTGGCTCCAGACAAGCCTTTGGATTCTGCTGTTCTGAGCCGTATGAAGCAGTTTTCTGCA 1757
Query 1317 ATGAACAAGTTCAAGAAAATGGCTCTTAGAGTCATTGCTGAGAGCTTATCTGAAGAAGAA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 ATGAACAAGTTCAAGAAAATGGCTCTTAGAGTCATTGCTGAGAGCTTATCTGAAGAAGAA 1817
Query 1377 ATAGCCGGCCTGAAAGAAATGTTTAATATGATAGATGCGGACAAGAGTGGTCAGATAACT 1436
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 ATCGCCGGCTTGAAAGAAATGTTTAATATGATAGATGCGGACAAGAGTGGTCAGATAACT 1877
Query 1437 TTCGAAGAACTGAAAGCAGGACTGAAACGAGTAGGGGCGAATCTCAAAGAGTCCGAAATT 1496
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1878 TTCGAAGAACTGAAAGCAGGACTAAAACGAGTAGGGGCGAATCTCAAAGAGTCTGAAATT 1937
Query 1497 CTCGACTTGATGCAAGCTGCTGATGTGGACAACAGCGGAACAATAGACTATAAAGAGTTC 1556
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1938 CTCGACTTGATGCAAGCTGCTGATGTGGACAACAGCGGAACAATAGATTACAAAGAGTTC 1997
Query 1557 ATAGCTGCAACATTGCATCTAAACAAAATAGAGAGAGAGGACCATTTGTTTGCAGCCTTT 1616
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 ATAGCTGCAACATTACATCTAAACAAAATAGAGAGAGAGGACCATTTGTTTGCAGCCTTT 2057
Query 1617 ACATACTTTGACAAAGATGGGAGCGGCTATATCACCCCGGACGAGCTTCAACAAGCTTGT 1676
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2058 ACATACTTTGACAAAGATGGGAGCGGCTATATCACCCCAGACGAGCTTCAACAAGCTTGT 2117
Query 1677 GAGGAGTTTGGTGTTGAGGATGTCCGCATAGAAGAACTGATGCGCGATGTTGATCAAGAC 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 GAGGAGTTTGGTGTTGAGGATGTCCGCATAGAAGAACTGATGCGCGATGTTGATCAAGAC 2177
Query 1737 AACGACGGGCGAATAGACTACAACGAATTTGTGGCAATGATGCAGAAAGGAAGCATCACA 1796
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2178 AATGACGGGCGAATAGACTACAACGAGTTTGTGGCGATGATGCAGAAAGGAAGCATCACA 2237
Query 1797 GGAGGACCTGTGAAAATGGGTCTAGAGAAAAGCTTTAGCATTGCTCTTAAACTCTAGTTT 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 GGAGGACCTGTGAAAATGGGTCTAGAGAAAAGCTTTAGCATTGCTCTTAAACTCTAGTTT 2297
Query 1857 C--AGTCTATTCAAAAG 1871
| |||||||| |||||
Sbjct 2298 CTCAGTCTATTTAAAAG 2314
> AT3G10660.1 | Symbols: CPK2, ATCPK2 | calmodulin-domain protein
kinase cdpk isoform 2 | chr3:3331398-3334268 REVERSE LENGTH=2142
Length=2142
Score = 1740 bits (942), Expect = 0.0
Identities = 1316/1498 (88%), Gaps = 20/1498 (1%)
Strand=Plus/Plus
Query 368 AGCTAAACCTAAGAAGCCTAAACACATGAAGAGAGTGTCAAGTGCAGGGCTTAGGACTGA 427
|||| ||||| ||||||||||||| |||| ||||||||| |||||||||||||| |||||
Sbjct 456 AGCTGAACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTTAGAACTGA 515
Query 428 GTCAGTATTGCAGAGGAAGACTGAAAACTTCAAGGAATTCTATTCCTT-GGGAAGGAAAC 486
|||||| ||||||||||| ||||||||||| ||||| |||||||| || ||| |||||||
Sbjct 516 GTCAGTGTTGCAGAGGAAAACTGAAAACTTTAAGGAGTTCTATTCATTAGGG-AGGAAAC 574
Query 487 TCGGACAAGGGCAATTTGGGACGAC-TTTTCTATGTGTGGAG-AAGACTACAGGGAAGGA 544
| ||||||||||||||||||||||| |||| |||| | ||| ||| ||| ||||| ||
Sbjct 575 TTGGACAAGGGCAATTTGGGACGACGTTTT-TATGCCTTGAGAAAG-GTACTGGGAACGA 632
Query 545 GTTTGCATGCAAGTCGATTGCTAAGAGGAAGCTGTTGACTGATGAGGACGTTGAGGATGT 604
| ||| |||||||||||| | ||||||||||| |||||||||||||| ||||| |||||
Sbjct 633 ATATGCGTGCAAGTCGATTTCCAAGAGGAAGCTTTTGACTGATGAGGATGTTGAAGATGT 692
Query 605 GAGAAGGGAAATTCAGATAATGCATCACTTGGCTGGTCACCCCAATGTCATATCCATTAA 664
|||||| || ||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 693 GAGAAGAGAGATTCAGATAATGCATCACTTGGCTGGTCATCCGAATGTTATATCTATTAA 752
Query 665 AGGAGCTTATGAGGATGTTGTGGCGGTGCACCTTGTAATGGAG-TGTTGTGCAGGTGGCG 723
||| ||||||||||||||||| ||||| || ||||| |||||| || ||| | |||||||
Sbjct 753 AGGTGCTTATGAGGATGTTGTTGCGGTACATCTTGTGATGGAGTTG-TGTTCGGGTGGCG 811
Query 724 AGCTTTTTGACAGGATCATTCAACGCGGTCACTACACAGAGAGGAAAGCGGCTGAGCTCA 783
|||||||||| || || |||||||| || || ||||| ||||||||||| ||||||||
Sbjct 812 AGCTTTTTGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGAGCTTG 871
Query 784 CTAGAACAATAGTTGGGGTAGTAGAGGCTTGCCATTCTCTTGGTGTTATGCATCGAGACC 843
| ||||| || |||||||| |||||||||| || |||||||||||||||||||| ||||
Sbjct 872 CGAGAACCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCGGGACC 931
Query 844 TCAAGCCCGAGAATTTTCTGTTTGTTAGTAAACACGAAGATTCCCTCTTGAAGACGATTG 903
||||||| ||||||||||| |||||||||| | | ||||||||||| ||||| ||||| |
Sbjct 932 TCAAGCCAGAGAATTTTCTATTTGTTAGTAGAGAGGAAGATTCCCTGTTGAAAACGATCG 991
Query 904 ATTTTGGACTCTCCATGTTCTTTAAGCCAGACGATGTTTTTACAGATGTTGTTGGTAGCC 963
| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 992 ACTTTGGACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGGTAGTC 1051
Query 964 CATATTATGTTGCTCCAGAAGTTCTTCGAAAGCGTTATGGCCCTGAAGCTGATGTCTGGA 1023
| |||||||| ||||||||||||||| ||||||||||||| |||||| | ||||| ||||
Sbjct 1052 CGTATTATGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGTGTGGA 1111
Query 1024 GTGCTGGAGTGATTGTGTACATTTTATTAAGCGGAGTTCCTCCATTCTGGGCTGAAACCG 1083
||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1112 GTGCTGGTGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTCTGGGCCGAAACCG 1171
Query 1084 AACAAGGTATTTTCGAACAGGTCCTCCACGGTGATCTTGACTTTTCGTCCGATCCATGGC 1143
|||||||||||||||| |||||||| || || |||||||||||||| || ||||||||||
Sbjct 1172 AACAAGGTATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCCATGGC 1231
Query 1144 CAAGCATATCTGAAAGTGC-AAAGGATTTAGTGAGGAAAATGCTTG-TCAGGGATCCCAA 1201
||||||| |||||||| || ||| || || || ||||||||||||| || | || |||||
Sbjct 1232 CAAGCATCTCTGAAAGCGCGAAA-GACTTGGTAAGGAAAATGCTTGTTC-GAGACCCCAA 1289
Query 1202 GAAAAGGTTAACTGCCCACCAAGTATTATGTCATCCGTGGGTTCAAG-TCGACGGCGTGG 1260
| ||| |||| || || ||||||||||||||||| ||||| | || | ||||| ||||
Sbjct 1290 GCGAAGACTAACCGCACATCAAGTATTATGTCATCCATGGGTAC-AGATTGACGGTGTGG 1348
Query 1261 CTCCAGACAAGCCTTTGGATTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAATGA 1320
||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 CTCCAGATAAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAATGA 1408
Query 1321 ACAAGTTCAAGAAAATGGCTCTTAGAGTCATTGCTGAGAGCTTATCTGAAGAAGAAATAG 1380
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1409 ACAAGTTCAAGAAAATGGCTCTTAGAGTCATAGCTGAGAGCTTATCTGAAGAAGAAATAG 1468
Query 1381 CCGGCCTGAAAGAAATGTTTAATATGATAGATGCGGACAAGAGTGGTCAGATAACTTTCG 1440
|||| | ||| ||||||| || |||||||| || ||||| ||||||||||| ||||| |
Sbjct 1469 CCGGTTTAAAACAAATGTTCAAGATGATAGACGCAGACAATAGTGGTCAGATCACTTTTG 1528
Query 1441 AAGAACTGAAAGCAGGACTGAAACGAGTAGGGGCGAATCTCAAAGAGTCCGAAATTCTCG 1500
||||||||||||||||||| |||||||| || || |||||||||||||| || ||||| |
Sbjct 1529 AAGAACTGAAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAGATTCTTG 1588
Query 1501 A-CTTGATGCAAGCTGCTGATGTGGACAACAGCGGAACAATAGACTATAAAGAGTTCATA 1559
| || ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 1589 ATCTA-ATGCAAGCTGCTGATGTGGACAATAGCGGAACGATAGACTACAAAGAGTTCATA 1647
Query 1560 GCTGCAACATTGCATCTAAACAAAATAGAGAGAGAGGACCATTTGTTTGCAGCCTT-TAC 1618
|| || ||||||||||||||||||||||||||||||||||||||||| || ||||| | |
Sbjct 1648 GCCGCCACATTGCATCTAAACAAAATAGAGAGAGAGGACCATTTGTTCGCCGCCTTCT-C 1706
Query 1619 ATACTTTGACAAAGATGGGAGCGGCTATATCACCCCGGACGAGCTTCAACAAGCTTGTGA 1678
||||||||||| || | ||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 1707 TTACTTTGACAAGGACGAGAGTGGCTTTATCACCCCGGACGAGCTTCAACAAGCTTGCGA 1766
Query 1679 GGAGTTTGGTGTTGAGGATGTCCGCATAGAAGAACTGATGCGCGATGTTGATCAAGACAA 1738
|||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1767 AGAGTTTGGTGTTGAAGATGCCCGCATAGAAGAAATGATGCGCGATGTTGATCAAGACAA 1826
Query 1739 CGACGGGCGAATAGACTACAACGAATTTGTGGCAATGATGCAGAAAGGAAGCATCACAGG 1798
|| || ||||||||||||||||| ||||||||||||||||||||||| ||||| | ||
Sbjct 1827 GGATGGACGAATAGACTACAACGAGTTTGTGGCAATGATGCAGAAAGGGAGCATAATGGG 1886
Query 1799 AGGACCTGTGAAAATGGGTCTAGAGAAAAGCTTTAGCATTGCTCTTAAAC-TCTAGTT 1855
|||||||||||| |||||| ||||||| ||| |||||||| |||| |||| | |||||
Sbjct 1887 AGGACCTGTGAAGATGGGTTTAGAGAACAGCATTAGCATTTCTCTGAAACAT-TAGTT 1943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92770607160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5