BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939904
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04990.1 | Symbols: SUN1, ATSUN1 | SAD1/UNC-84 domain protei... 2206 0.0
AT3G10730.1 | Symbols: SUN2, ATSUN2 | SAD1/UNC-84 domain protei... 728 0.0
> AT5G04990.1 | Symbols: SUN1, ATSUN1 | SAD1/UNC-84 domain protein
1 | chr5:1471481-1473964 REVERSE LENGTH=1827
Length=1827
Score = 2206 bits (1194), Expect = 0.0
Identities = 1385/1475 (94%), Gaps = 22/1475 (1%)
Strand=Plus/Plus
Query 1 TGTGTAGTCAAACCAGATCAAATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TGTGTAGTCAAACCAGATCAAATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGCG 233
Query 61 GCGGCGACTAGACGGACGCCGATTCTTTCCGGAGAGAAAAAATCAAACTTTGATTACCCG 120
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 234 GCAGCGACTAGACGGACGCCGATTCTTGCCGGAGAGAAAAAATCAAACTTTGATTACCCT 293
Query 121 CAAAGCGAATCGCTTGCGAACGGTGGTGGTGTTGGGGAAGCCGGTGGTACGAGCAGAGAT 180
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 294 CAAAGCGAATCGCTTGCGAAC---GGTGGTGTTGGGGAAGCCGGTGGTACGAGTAGAGAT 350
Query 181 CTGAGCCGCGGTGAGGCTATCGTTGATCGCTCTCACGGTCAAGATTTGGGTCCTGTGACG 240
|||||||||||||| |||| | ||||||| ||||| || |||||||||||||||||||||
Sbjct 351 CTGAGCCGCGGTGAAGCTACCCTTGATCGATCTCAGGGACAAGATTTGGGTCCTGTGACG 410
Query 241 AGGAGGTCTGGTTCCGCTGCGACGGGGACTAATACCACCACCACGCAGCGCCGTACGCGG 300
|| ||||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 411 AGAAGGTCTGTTTCCGCTGCGACGGGGACTAATACCACCGCTACGCAGCGCCGGACGCGG 470
Query 301 AAGGTTGCGACTCCTAAGCCTGAGAAAGCGCGGTGGAAGACAGTGGTGAGGATATTCGCA 360
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 471 AAGGTTGCGACTCCTAAGTCTGAGAAAGCGCGGTGGAAGACAGTGGTGAGGATATTTGCG 530
Query 361 AAGCAGCTTGGGGCACTTTTGATCATTGTTGGGTTAATTCAATTGACGAGGAAGATGATT 420
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 AAGCAGCTTGGTGCGCTTTTGATCATTGTTGGGTTAATTCAATTGACGAGGAAGATGATT 590
Query 421 CTCAAGGCTTCGTCTCCGTCCTCTCCGATTTCTTCTTATGAAACGGGGATGGCGTTTTCG 480
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 591 CTCAAGGCTTCTTCTCCGTCCTCTCCGATTTCTTCTTATGAAACGGAGATGGCGTTTTCG 650
Query 481 GGATTAGAAAGCCGAATTGCGGAAGTTGATGGTCTTGTTAAGGCCACGACGAGTACGATG 540
||||| |||||||||||||||||||| ||||||||||||||||| ||||||| | |||||
Sbjct 651 GGATTGGAAAGCCGAATTGCGGAAGTAGATGGTCTTGTTAAGGCTACGACGAATTCGATG 710
Query 541 CAGGTTCAAGTTGAATTACTTGATAAGAAGATGGAGAGGGAAGCAAAAACGCTGAGGCAA 600
||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||
Sbjct 711 CAGGTTCAAGTTGAATTGCTTGATAAGAAAATGGAGAGGGAAGCAAAAGTGCTTAGGCAA 770
Query 601 GAAATCGAGAGGAAAGCTTCTGTATTTCAGAGTGAGTTGAAGAAGATAGAATCTAGAACT 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 771 GAAATCGAGAGGAAAGCTTCTGCATTTCAGAGTGAGTTGAAGAAGATAGAATCTAGAACT 830
Query 661 GAGTCACTAGAGAAGTCTGTAGATGAAGTAAATGCTAAATCTTGGGTGACGAAAGATGAG 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 831 GAGTCACTAGAGAAGTCTGTAGATGAAGTAAATGCTAAACCTTGGGTGACGAAAGATGAG 890
Query 721 TTAGAGAGGATTTATGAGGAACTGAAGAAGGGTAATGTCGATGATTCTGCTTTTAGTGAG 780
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 891 TTAGAGAGGATTTATGAGGAACTGAAGAAGGGGAATGTTGATGATTCTGCTTTTAGTGAG 950
Query 781 ATTAGCATTGATGAATTGAGGGCTTATGCTCGTGACATTGTGGAGAAAGAGATTGAGAAA 840
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 951 ATTAGCATTGATGAATTGAGGGCTTATGCTCGTGATATTATGGAGAAAGAGATTGA-AAA 1009
Query 841 -CATGCTGCAGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCTTTTGT 899
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GCATGCTGCTGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCTTTTGT 1069
Query 900 GATGCAGCATTCAGATCCTTATCTTGTTGGAAAAGGGAGTAGCTGGTTTGCGACTACCAT 959
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1070 GATGGAGCATTCAGATCCTTATCTTGTTGGTAAAGGGAGTAGCTGGTTTGCGACTACCAT 1129
Query 960 GCGACGCGCTCATACCAATGCGGTTAAGATGTTATCTCCGAGTTTTGGGGAGCCTGGACA 1019
||| ||||||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 1130 GCGGCGCGCTCATACGAATGCGGTTAAGATGTTATCTCCGAGCTTCGGTGAGCCTGGACA 1189
Query 1020 GTGTTTTCCTCTGAAAGGTAGTGATGGCTATGTGCAAATCAGGCTGAGAGGACCAATCAT 1079
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1190 ATGTTTTCCTCTGAAAGGTAGCGAGGGCTATGTGCAAATCAGGCTGAGAGGACCAATCAT 1249
Query 1080 ACCAGAGGCTTTCACATTGGAGCATGTAGCTAAGAGTGTAGCTTACGACAGATCGAGTGC 1139
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1250 ACCAGAGGCTTTCACATTGGAGCATGTAGCTAAGAGTGTAGCCTACGACAGATCGAGTGC 1309
Query 1140 TCCAAAAGATTGCCGTGTATCAGGATGGCTGCAAGGACAAGGAAAAGGACTGGAATCCTC 1199
|||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 1310 TCCAAAAGATTGCCGTGTATCAGGATCCCTGCAAGGAC-----------C-GGAATCCTC 1357
Query 1200 AGCGGAGA-ATGAGAACATGCAACTTCTAACAGAGTTCACTTACGACCTAGACAGGTCGA 1258
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AGCGGAGACA-GAGAACATGCAACTTCTAACAGAGTTCACTTACGACCTAGACAGGTCGA 1416
Query 1259 ACGCACAAACATTCAACATCTTAGACACATCAAACTCTGGTCCAATCGATACTGTCAGGC 1318
||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||
Sbjct 1417 ACGCACAAACATTCAACATCTTAGAGTCATCAAGCTCTGGTCTAATCGATACTGTCAGGC 1476
Query 1319 TAGATTTCACCTCCAACCATGGAAGCGACTCGCACACTTGCATCTACCGGTTCAGGGTTC 1378
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TAGACTTCACCTCGAACCACGGAAGCGACTCGCACACTTGCATCTACCGGTTCAGGGTTC 1536
Query 1379 ACGGGCGTGCATCAGACCCGGTCCCTGTTGTGGAAACGAGTCTTGATCAGGACTCTTCAC 1438
| |||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 1537 ATGGGCGTGCGCCAGACCCGGTTCCTGTTGTGGGAACGAATCTTGATCAGGACTCTTCAC 1596
Query 1439 CTGGAAGTGAATAAACAAACATCTTCTGTATTGTA 1473
||| ||||||||||| | | |||||||| |||||
Sbjct 1597 CTGAAAGTGAATAAA-AC-C-TCTTCTGTTTTGTA 1628
> AT3G10730.1 | Symbols: SUN2, ATSUN2 | SAD1/UNC-84 domain protein
2 | chr3:3358328-3360682 REVERSE LENGTH=1756
Length=1756
Score = 728 bits (394), Expect = 0.0
Identities = 1094/1420 (77%), Gaps = 96/1420 (7%)
Strand=Plus/Plus
Query 22 ATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGCGGCGG-CGACT-AGACGGACGC 79
|||||||| ||||||||||| |||||||||| | | | || | | | || |||||||
Sbjct 161 ATGTCGGCGTCAACGGTGTCAATCACCGCTAGT-C--C-TAGGAC-AATAAGGCGGACGC 215
Query 80 CGATTCTTTCCGGAGAGAAAAAATCAAACTTTGATTACCCGCAAAGCGAATCGCTTGCGA 139
|| |||| ||||| ||||| ||||| || ||||||| ||||| |||||||| | ||| |
Sbjct 216 CGGTTCTCTCCGGTGAGAAGAAATCTAATTTTGATTTCCCGCCGAGCGAATCTCATGCCA 275
Query 140 ACGGTGGTGG-TGTTGG-G-GAAG-CCGGTGGTACGAGC-AGAGATCTGAGCCGCGGTGA 194
| | | || |||| | | | | | |||||||| | || ||||||| |||| ||
Sbjct 276 A---T-GCGGCAATTGGAGAGTCGTCTGCTGGTACGAACAAG-GATCTGATTCGCGCCGA 330
Query 195 GGCTATCGTTGATCGCT-C-TCACGGTCAAGATTTGGGTCCTGTGACGAGGAGGTCTGGT 252
|||| || ||| | | | ||| | | || | ||||| ||||| |||| || ||
Sbjct 331 GGCTGCCGGTGAGAGATCCAACAC-CT-ACGACGTAGGTCCGGTGACAAGGAAATCAGGA 388
Query 253 TCCGCTGCGACGGGGACTAATACCACCACCACGCAGCGCCGTACGCGGAAGGT-TGC-GA 310
||| | ||||||||||||||||| |||||||||||||| || |||||||| || | | |
Sbjct 389 TCCACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGGACGCGGAA-GTCT-CAGG 446
Query 311 CTCCTAAGCCTGAGA-A-AGCGCGGTGGAAGACAGTGGTGAGGATATTCGCAAAGCAGCT 368
|||| | ||| | || | |||||||||||||| ||| ||||||| ||||| |
Sbjct 447 GGAATAAG-AT-AGATAGAGGGAAATGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATT 504
Query 369 TGGGGCACTTTTGATCA-TTGTTGGGTTAATTCAATTGACGAGGAAGA-TGA-TTCTCAA 425
|||||| |||||| | | ||||||| || ||||| |||| ||||| | ||| || | ||
Sbjct 505 TGGGGCTCTTTTG-TTACTTGTTGGATTGATTCAGTTGATTAGGAA-ATTGACTT-TGAA 561
Query 426 GGCTTCGTCTCCGTCCTCTCCG-ATTTCTTCTTA-TGAAACGGGGATGGCGTTTTCGGGA 483
|| |||||||| ||| ||| || ||||| | | |||||||| |||| | |||||| |
Sbjct 562 GGATTCGTCTCTGTCTTCTTCGAATTTC--CCAATTGAAACGGAAATGGTGCTTTCGGAA 619
Query 484 TTAGAAAGCCGAATTGCGGAAGTTGATGGTCTT-GTTAAGGCCACGACG-AGTACGATGC 541
|| || || || ||| | | |||||||||| || || ||| | |||||| || | |||||
Sbjct 620 TTGGAGAGTCGGATTTCTGCAGTTGATGGT-TTGGTGAAGACTACGACGAAG-ATGATGC 677
Query 542 AGGTTCAAGTTGAATTACTTGATAAGAAGATGGAGAGGGAAGCAAAAACGCTGAGGCAAG 601
||||||||||||| || ||||||||||||||||| || ||| ||| | | |||||| ||
Sbjct 678 AGGTTCAAGTTGAGTTTCTTGATAAGAAGATGGATAGTGAATCAAGAGCATTGAGGC-AG 736
Query 602 A-AATCGAGAGGAAAGCTTCTGTATTTCAGAGTGAGTTGAAGAAGATAGAATCT-AGAAC 659
| || || | | ||||||| || || ||||||||||||||| |||| ||| || ||
Sbjct 737 ACGATAGATTCCACATCTTCTGTGTTACATAGTGAGTTGAAGAAGGTAGAGTCTAAG-AC 795
Query 660 TGAGTCACTAGAGAAGTCTGTAGATGAAG-TAAATGCTAAATCTTGGGTGACGAAAGATG 718
||| || || |||||||||| || ||||||||||| ||| |||| | | ||| |
Sbjct 796 AGAGAGGTTACAGGTTTCTGTAGATG-AGTTAAATGCTAAACCTTTGGTGTCTAGAGAGG 854
Query 719 AGTTAGAGAGGA-TTTATGAGGAACTGAAGAAGGGTAATGTCGATGATTCTGCTTTTAGT 777
||||||||| || |||| ||||| ||||||||||||| |||| |||||||| | |
Sbjct 855 AGTTAGAGA-GAGTTTACGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTG-----A-T 907
Query 778 GAGATTAGCATTGATGAATTGAGGGCTTATGCTCGTGACATTGTGGAGAAAGAGATTGAG 837
| ||| ||||||| || |||||||||||||||||||||| |||||||||||||| | |
Sbjct 908 --G-TTAACATTGATAAACTGAGGGCTTATGCTCGTGACATAGTGGAGAAAGAGATAGGG 964
Query 838 AAACATGCTGCAGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCTTTT 897
||||||| ||||||||||||||| ||||| |||||||| || || |||||||| ||||||
Sbjct 965 AAACATGTTGCAGATGGCCTTGGTCGAGTAGATTATGCGTTAGCGTCTGGTGGAGCTTTT 1024
Query 898 GTGATGCAGCATTCAGATCC-TTATCTTGTTGGAAAAGGGAGTAGCTGGTTTGCGACTAC 956
|| ||| |||||| ||||| || |||||||||||| ||| ||| ||||||| ||| |
Sbjct 1025 GTAATGGGGCATTCGGATCCGTT-TCTTGTTGGAAATGGGCGTAATTGGTTTGGGACAAG 1083
Query 957 CATGCGACGCGCTCATACCAATGCGGTTAAGATGTTATCTCCGAGTTTTGGGGAGCCTGG 1016
|| | |||| | ||||| ||| ||||||||||||||| |||||||||| |||||||||||
Sbjct 1084 CAGGAGACGGGTTCATAGCAAAGCGGTTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGG 1143
Query 1017 ACAGTGTTTTCCTCTGAAAGGTAGTGATGGCTATGTGCAAATCAGGCTGAGAGGACCAAT 1076
||||||||||||||||||||| || |||| ||||| | | ||||||| |||| ||||||
Sbjct 1144 ACAGTGTTTTCCTCTGAAAGGAAGCAATGGATATGTTCTAGTCAGGCTAAGAGCACCAAT 1203
Query 1077 CATACCAGAGGCT-TTCACATTGGAGCATGTAGCTAAGAG-TGTAGCTTACGACAGATCG 1134
|| ||||| ||| || || ||||| ||||| ||||| | |||||| || |||||||||
Sbjct 1204 AATTCCAGAAGCTGTT-ACTTTGGAACATGTCTCTAAG-GCTGTAGCATATGACAGATCG 1261
Query 1135 AGTGCTCCAAAAGATTGCCGTGTATCAGGATGGCTGCAAG-GACAAGGAAAAGGACTGGA 1193
|| || ||||| ||||||||||||||||||||||| | | |||| | | | | |
Sbjct 1262 AGCGCCCCAAAGGATTGCCGTGTATCAGGATGGCT--AGGTGACAT--A---G-A-T--A 1310
Query 1194 ATCCTCAGCGGAGAATGAGAACA-TGCAACTTCTAACAGAGTTCACTTACGACCTAGACA 1252
| | | ||| ||||| || ||| ||||| ||||| |||| ||||||| ||||||
Sbjct 1311 -T-----G-G-AGACTGAGA-CAATGCCCCTTCTTACAGAATTCAGTTACGACTTAGACA 1361
Query 1253 GGTCGAACGCACAAACATTCAACATCTT-AGACACAT-CAAACTCTGGTCCAATCGATAC 1310
|||| || ||||| |||||| |||| | |||| | | | |||| || | || | ||
Sbjct 1362 GGTCCAATGCACAGACATTCGACAT-TGCAGACTC-TGCTCACTCAGGACTTGTCAACAC 1419
Query 1311 TGTCAGGCTAGATTTCACCTCCAACCATGGAAGCGACT-CGCACACTTGCATCTACCGGT 1369
|||||||||||| |||| ||||||||||||||| || | ||||||||||||||||| |
Sbjct 1420 TGTCAGGCTAGACTTCAATTCCAACCATGGAAGCT-CTTCACACACTTGCATCTACCGCT 1478
Query 1370 TCAGGGTTCACGGGCGTGCA-TCAGACCCGGTCCCTGTTG 1408
|||||||||| || |||| | | |||| | ||| ||||||
Sbjct 1479 TCAGGGTTCATGGCCGTGAACT-AGACTCAGTCTCTGTTG 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5