BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939906
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05010.1 | Symbols: | clathrin adaptor complexes medium sub... 2617 0.0
AT5G40855.1 | Symbols: | unknown protein; Has 30201 Blast hits... 204 3e-51
> AT5G05010.1 | Symbols: | clathrin adaptor complexes medium subunit
family protein | chr5:1476583-1480197 FORWARD LENGTH=2059
Length=2059
Score = 2617 bits (1417), Expect = 0.0
Identities = 1550/1615 (96%), Gaps = 6/1615 (0%)
Strand=Plus/Plus
Query 15 AATCAAAATGGTCGTGCTTGCTGCTTCCATTGTGGTCAAGTCTGGGAAAGTTCTTGTTTC 74
|||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 144 AATCAAAATGGTTGTGCTTGCTGCTGCCATTGTGGTCAAGTCTGGGAAAGTGATTGTTTC 203
Query 75 CAGACAATATGTGGATATGTCCCGTATCAGAATCGAAGGTCTGCTTGCAGCTTTTCCTAA 134
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 204 CAGACACTATGTGGATATGTCCCGTATCAGAATCGAAGGTCTACTTGCAGCTTTTCCTAA 263
Query 135 GCTGGTTGGAATGGGAAAGCAGCATACCTATATTGAGACAGAGAATGTCCGATATGTATA 194
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 264 GCTGGTTGGAATGGGAAAGCAGCATACCTATATCGAGACGGAGAATGTGCGATATGTTTA 323
Query 195 TCAGCCTATTGAATCTCTGTTCCTGCTTCTTGTTACAACTAAGCAGAGTAACATTCTAGA 254
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TCAGCCTATTGAAGCTCTGTTCCTGCTTCTTGTTACAACTAAGCAGAGTAACATTCTAGA 383
Query 255 AGATCTGGCCACCCTCACATTGCTCTCCAAACTTGTACCTGAGTATTCCATGTCTTTAGA 314
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 384 AGACCTGGCCACCCTTACTTTGCTCTCCAAACTTGTACCTGAGTATTCCATGTCTTTAGA 443
Query 315 TGAAGAAGGGATTTCCAGGGCTTCTTTTGAGCTGATATTTGCATTTGATGAAGTCATATC 374
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 444 TGAAGAAGGGATTTCCAGGGCATCTTTTGAGCTCATATTTGCATTTGATGAAGTCATATC 503
Query 375 TCTTGGGCACAAGGAAAGTGTGACAGTTGCCCAGGTGAAGCAGTATTGTGAAATGGAAAG 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TCTTGGGCACAAGGAAAGTGTGACAGTTGCCCAGGTGAAGCAGTATTGTGAAATGGAAAG 563
Query 435 TCATGAGGAGAAGTTGCATAAACTGGTAATGCAGAGCAAGATCAATGACACTAAAGACGT 494
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 564 TCATGAGGAGAAGTTGCATAAACTGGTTATGCAGAGCAAGATCAATGACACTAAGGACGT 623
Query 495 GATGAAGCGTAAGGCTAATGAGATTGACAAAAGCAAGATTGAAAAGAATAAGCC---AGG 551
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 624 GATGAAGCGTAAGGCTAATGAGATTGACAAAAGCAAGATTGAAAAGAATAAGCCAGGAGG 683
Query 552 ATATTCGTCCATTAGTTCAATGGGATCTGGAAGACTTGAAAGTAGTTTCAGTGAATTGGG 611
|| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 684 ATTTTCGTCCATGGGTTCAATGGGATCTGGAAGACTTGAAAGTGGTTTCAATGAATTGAG 743
Query 612 CATATCCAGTGGTGGTGGTGGCGGTGGTTTTGGAAGTGGTTCTGGGTTTGGCATGATTTC 671
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 744 CATATCCA---GTGGTGGCGGCGGTGGTTATGGAAGTGGTTCTGGGTTTGGCATGATTTC 800
Query 672 AGATGTCGACCCTATCAATACCAAACCAAAAGATCGATCACGGTCTTCTGTTACTGCTCC 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AGATGTCGACCCTATCAATACCAAACCAAAAGATCGATCACGGTCTTCTGTTACTGCTCC 860
Query 732 TCCTAAGAGTTCTGGCATGAAACTTGGCAAGTCGGGCAAGAACCAGTTAATGGAGTCCCT 791
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 861 TCCTAAGAGTTCTGGCATGAAACTTGGCAAGTCGGGAAAGAACCAGTTAATGGAGTCCCT 920
Query 792 TAAAGCAGAAGGTGAAGACATCATTGAAGATGTTAAGCCTACTGGCCAATCCAAAGCAGC 851
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TAAAGCAGAAGGTGAAGACGTCATTGAAGATGTTAAGCCTACTGGCCAATCCAAAGCAGC 980
Query 852 TGCCCCTCCTCCAACTGATCCTTTCACATTAACTGTCGAAGAGAAGCTCAATGTTGCATT 911
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 981 TGCCCCACCTCCAACTGATCCTTTCACATTAACTGTTGAAGAGAAGCTCAATGTTGCATT 1040
Query 912 GAGACGAGATGGTGGACTCAGTAGCTTTGATATGCAGGGAACCCTATCACTTCAAATTCT 971
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1041 GAGACGAGATGGTGGACTTAGTAGCTTTGATATGCAGGGAACCCTGTCACTTCAAATTCT 1100
Query 972 TAACCAAGAAGATGGATTTGTCCAAGTCCAGATCGCAACCGGTGAAAATCCCGAAATTCT 1031
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1101 TAACCAAGAAGATGGATTTGTCCAAGTCCAGATTGCAACCGGTGAAAATCCCGAAATTCT 1160
Query 1032 TTTCAAGACCCATCCCAACATCAACCGAGATATGTTCAATAATGAGAATATTCTAGGGCT 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TTTCAAGACCCATCCCAACATCAACCGAGATATGTTCAATAATGAGAATATTCTAGGGCT 1220
Query 1092 GAAGAGACCTGATCAGCCCTTTCCCACTGGTCAAGGTGGAGATGGTGTTGGTCTTCTCAG 1151
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 GAAGAGACCTGATCAGCCATTTCCCACTGGTCAAGGTGGAGATGGTGTTGGTCTTCTCAG 1280
Query 1152 GTGGAGAATGCAAAGAGCAGACGAGTCAATGGTGCCACTAACAATAAACTGCTGGCCTTC 1211
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1281 GTGGAGAATGCAAAGAGCAGACGAGTCTATGGTGCCACTAACAATAAACTGCTGGCCTTC 1340
Query 1212 AGTCTCTGGAAATGAGACATATGTCAGCCTCGAGTATGAAGCGTCATCCATCTTTGATCT 1271
|||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 1341 AGTCTCTGGAAACGAGACATATGTCAGCCTCGAGTACGAAGCCTCGTCCATGTTTGATCT 1400
Query 1272 GACGAATGTAATCATCTCCGTACCACTTCCTGCACTGAGAGAGGCACCAAGCGTTAGACA 1331
||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1401 GACTAATGTCATCATCTCCGTACCACTTCCTGCTCTGAGAGAGGCACCAAGCGTTAGACA 1460
Query 1332 ATGCGATGGGGAGTGGAGGTACGACCCAAGAAATTCTGTTCTGGAATGGTCTATACTTCT 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1461 ATGCGATGGGGAGTGGAGGTACGACCCAAGAAATTCTGTTCTGGAATGGTCTATACTACT 1520
Query 1392 TATTGACAACTCCAACCGCAGTGGGTCAATGGAGTTTGTTGTGCCACCAGTGGATTCATC 1451
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1521 TATTGACAACTCCAACCGCAGTGGCTCAATGGAGTTTGTTGTGCCTCCAGTGGATTCATC 1580
Query 1452 GGTGTTCTTCCCCATCTCTGTTCAGTTTGCAGCCACAAGTACCTACAGTGGCTTGAAGGT 1511
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1581 GGTGTTCTTCCCCATCTCTGTTCAGTTTGCAGCGACAAGTACCTACAGTGGCTTGAAGGT 1640
Query 1512 GACTGGAATGATACCTCTGAGAGGCGGTGGTGGTGCGATTCCAAGGTTTGTGCAGAGGAC 1571
|||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 1641 GACTGGAATGATTCCTCTGAGAGGAGGTGGTGGTGCGACTCCTAGGTTTGTGCAGAGGAC 1700
Query 1572 GCAGCTGATTGCACAGAATTACCAAGTCATATGAGACGCTCCTTTTGGAGCCTCG 1626
|||||||||||| ||||| || |||||||||||| || ||||||| || || |||
Sbjct 1701 GCAGCTGATTGCCCAGAACTATCAAGTCATATGAAACACTCCTTTGGGGGCATCG 1755
> AT5G40855.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16369114-16369350
REVERSE LENGTH=237
Length=237
Score = 204 bits (110), Expect = 3e-51
Identities = 139/152 (91%), Gaps = 5/152 (3%)
Strand=Plus/Minus
Query 288 TGTACCTGAGTATTCCATGTCTTTAGATGAAGAAGGGA-TTT-CCAGGGCTTCTTTTGAG 345
||||| ||||| ||||||||||||||||||| |||||| ||| ||||||| ||||||||
Sbjct 234 TGTACATGAGTCTTCCATGTCTTTAGATGAACAAGGGATTTTGGCAGGGCTACTTTTGAG 175
Query 346 CTGATATTTGCATTTGATGAAGTCATATCTCTTGGGCACAAGGAAAGTGTGAC-AGTTGC 404
||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||
Sbjct 174 CTGATATTTGCATTTGACGAGGTCATATCTCTTGGGCACAAGGAAAGTGTGACAAG-TGT 116
Query 405 CCAGGTGAAGCAGTATTGTGAAATGGA-AAGT 435
||||||||||||||||||||||||||| ||||
Sbjct 115 CCAGGTGAAGCAGTATTGTGAAATGGAGAAGT 84
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5