BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939909

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03730.2 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase supe...   291    2e-78


> AT5G03730.2 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily 
protein | chr5:974498-979849 REVERSE LENGTH=2974
Length=2974

 Score =  291 bits (157),  Expect = 2e-78
 Identities = 165/169 (98%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  1     ATGTTGCTGTGAAAATTCTCATGGAGCAAGACTTCCATGCTGAGCGCGTCAATGAGTTCT  60
             |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct  1910  ATGTTGCTGTGAAAATTCTCATGGAGCAAGACTTCCATGCTGAGCGTGTTAATGAGTTCT  1969

Query  61    TGAGAGAGGTTGCGATAATGAAGCGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTG  120
             | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1970  TAAGAGAGGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTG  2029

Query  121   CGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAG  169
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2030  CGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAG  2078



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9154845882


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5