BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939912

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05450.1 | Symbols:  | P-loop containing nucleoside triphosp...   143    2e-33


> AT5G05450.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr5:1612006-1615356 
FORWARD LENGTH=2014
Length=2014

 Score =  143 bits (77),  Expect = 2e-33
 Identities = 103/115 (90%), Gaps = 3/115 (3%)
 Strand=Plus/Plus

Query  328   GATCATGTTCATGCAGTATGATCCCACCTCAAGACCAAAATATGTTCAACCACAGGGCCG  387
             ||| |||||  | |||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct  1113  GATTATGTT-GTTCAGTATGATCCC-CCACAAGACCCAAATATGTTCAACCACAGGGCCG  1170

Query  388   GCAGAACTGCAAGGCTGGGAAGACAAAGGAGGGCCATTGTGTTTTTACTGTCCCA  442
             |||||||||||||  | ||||||||| ||||||||||||||||||||||| ||||
Sbjct  1171  GCAGAACTGCAAGATTAGGAAGACAAGGGAGGGCCATTGTGTTTTTACTG-CCCA  1224


 Score = 58.4 bits (31),  Expect = 6e-08
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  223   GACTTGATATTCCAGGCATTGATTATGTAGTTCA  256
             |||||||||||||||||||||||||||| |||||
Sbjct  1093  GACTTGATATTCCAGGCATTGATTATGTTGTTCA  1126



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5