BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939913

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05070.1 | Symbols:  | DHHC-type zinc finger family protein ...   215    2e-55


> AT5G05070.1 | Symbols:  | DHHC-type zinc finger family protein 
| chr5:1496855-1498544 FORWARD LENGTH=1386
Length=1386

 Score =  215 bits (116),  Expect = 2e-55
 Identities = 129/135 (96%), Gaps = 1/135 (1%)
 Strand=Plus/Plus

Query  33   AGAATGATTAGTCAGGTTCATTGCATTCCCTCTGGTGATCATATTCTCATGACGGCTTCT  92
            |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  67   AGAA-GATTAGTCAAGTTCATTGCATTCCCTCTGGTGATCATATTCTCATGACGGCTTCT  125

Query  93   TCTTCTAAACACATTTCTCATATCAGATTCTACAAAGCCTGGAAGGGTAACAGTAGATTT  152
            ||||| ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  126  TCTTCCAAACACATTCCTCATATCAGATTCTACAAAGCCTGGAAGGGTAACAACAGATTT  185

Query  153  TGCTGTGGTGGTAGA  167
            |||||||||||||||
Sbjct  186  TGCTGTGGTGGTAGA  200



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12265330756


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5