BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939916

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03730.2 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase supe...   292    1e-78


> AT5G03730.2 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily 
protein | chr5:974498-979849 REVERSE LENGTH=2974
Length=2974

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 166/170 (98%), Gaps = 0/170 (0%)
 Strand=Plus/Plus

Query  1     ATGTTGCTGTGAAAATTCTCATGGAGCAAGACTTCCATGCTGAGCGCGTCAATGAGTTCT  60
             |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct  1910  ATGTTGCTGTGAAAATTCTCATGGAGCAAGACTTCCATGCTGAGCGTGTTAATGAGTTCT  1969

Query  61    TGAGAGAGGTTGCGATAATGAAGCGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTG  120
             | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1970  TAAGAGAGGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTG  2029

Query  121   CGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGA  170
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2030  CGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGA  2079


 Score =  226 bits (122),  Expect = 1e-58
 Identities = 136/142 (96%), Gaps = 3/142 (2%)
 Strand=Plus/Plus

Query  175   AATTAGATGAGAGACGTCGCCTGAGTATGGCTCATGATGTGGCTAAGGCAATGAATTATC  234
             |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  2123  AATTAGATGAGAGACGTCGCCTGAGTATGGCTTATGATGTGGCTAAGGGAATGAATTATC  2182

Query  235   TTCACAACT-GCAATCCTCCAATTGTGCATAGAGATCTAAAATCTCCAAACTTGTTGGTT  293
             ||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  2183  TTCACAA-TCGCAATCCTCCAATTGTGCATAGAGATCTAAAATCTCCAAACTTATTGGTT  2241

Query  294   GACaaaaaaaTATACAGTCAAG  315
             ||||||||| ||||||||||||
Sbjct  2242  GACAAAAAA-TATACAGTCAAG  2262


 Score =  174 bits (94),  Expect = 5e-43
 Identities = 117/127 (92%), Gaps = 5/127 (4%)
 Strand=Plus/Plus

Query  312   CAAGTGAGCCATGGAAGCGTCCATAATTTTGCAACTATAATGGACTTGCTAAGACCATTG  371
             ||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct  2556  CAA-TGAGCCATGGAAGCGTCCATCA-TTTGCAACTATAATGGACTTGCTAAGACCATTG  2613

Query  372   ATAAAATCAGCGGTTCCTCCGCCCAACCGCTCGGATTTGTAAGAT-CCCC-G-TCCATTT  428
             || ||||||||||||||||||||||||||||||||||||||| || |||| | |||||| 
Sbjct  2614  ATCAAATCAGCGGTTCCTCCGCCCAACCGCTCGGATTTGTAAAATACCCCCGGTCCATTC  2673

Query  429   GAAAGTT  435
              ||||||
Sbjct  2674  AAAAGTT  2680



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5