BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939925
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05090.1 | Symbols: | Homeodomain-like superfamily protein ... 1299 0.0
> AT5G05090.1 | Symbols: | Homeodomain-like superfamily protein
| chr5:1503232-1504494 FORWARD LENGTH=1263
Length=1263
Score = 1299 bits (703), Expect = 0.0
Identities = 791/834 (95%), Gaps = 4/834 (0%)
Strand=Plus/Plus
Query 1 tttttttGTTAGTGTTGAGGATGAGAGAAGAAGATTCCAATTGGTTTGCTAAATGGGAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TTTTTTTGTTAGTGTTGAGGATGAGAGAAGAAGATTCCAATTGGTTTGCTAAATGGGAAG 201
Query 61 AAGAGCTTCCGTCGCCGGAGGAACTCATACCTTTATCTCAATCTTTAATCACTCCTGATC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 202 AAGAGCTTCCGTCGCCGGAGGAACTCATACCTTTATCTCAATCTTTAATCACGCCTGATC 261
Query 121 TCGCCATCGCCTTCGATCTCCACCG---CGATAACTCAAACTCCGGTCAACCTCTACCTC 177
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 262 TCGCCATCGCCTTCGATCTCCACCGTAACAACAACTCAAACTCCGGTCAACCTCTACCTC 321
Query 178 AAACCACGCCGCCACAACCCAATTCCTCAGCCGAGTTTGCCGGAGATTCCACCGGAGACG 237
||||||| |||||||||||||||||||||||||| | |||||||| || ||||||||||
Sbjct 322 AAACCACACCGCCACAACCCAATTCCTCAGCCGAAATCGCCGGAGACTCTACCGGAGACG 381
Query 238 AACCAGCAAGAACTCTGAAACGACCGCGTTTAGTATGGACGCCGCAGCTACACAAGCGTT 297
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 382 AACCAGCAAGAACGCTAAAACGACCGCGTTTAGTATGGACGCCACAGCTACACAAACGTT 441
Query 298 TCGTAGACGCGGTGGCTCATCTCGGGATAAAAAACGCTGTTCCTAAAACCATCATGCAGC 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 442 TCGTAGACGCGGTGGCTCATCTCGGGATAAAAAACGCGGTTCCTAAAACCATCATGCAGC 501
Query 358 TTATGAGCGTCGATGGTTTAACAAGAGAAAACGTCGCTAGCCATTTGCAAAAATACAGAC 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TTATGAGCGTTGATGGTTTAACAAGAGAAAACGTCGCTAGCCATTTGCAAAAATACAGAC 561
Query 418 TTTACCTCAAAAGAATGCAATCCGGCGGCGGTGGAGGCGGCGGAGGTGATTCCGATCATC 477
||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 562 TTTACCTCAAAAGAATGAAATCCGGCGGCGGAGGAGGCGGCAGCGGTGATTCCGATCATC 621
Query 478 TCTTCGCTAGTTCACCTGTTCCTCCACATTTCCTCCATCAGACAAGTAGACAAAGCTCTG 537
|||| || || |||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 622 TCTTTGCCAGCTCACCTGTTCCTCCACATTTCCTCCATCCGACAAGTAGACAGAGCTCCG 681
Query 538 ACCTTTTCATACCCACTTTTGTCCCAATTTCAAGTCAGCAGCAACATATCGCAGCACCAC 597
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 682 ACCTTTTCATACCCTCTTTTGTCCCAATTTCAACTCAGCAGCAACATATCGCAGCACCAC 741
Query 598 CGTCTCAGTTCCTCCACCGACAAATGTCCGCCGTTAATTTCACTTCTCCGACCAAAGCGA 657
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 742 CGTCTCAGTTCCTCCACCGACAAATCTCCGCCGTTAATTTCACTTCACCGACCAAAGCGA 801
Query 658 CGGACCAAGCAATGTTCTTGGCTAGGCAGCAGAGTCAACTACAGCAACCAGTTTTCAGAC 717
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 802 CCGACCAAGCAATGTTCTTGGCTAGGCAGCAGAGTGAACTACAGCAACCAGTTTTCAAAC 861
Query 718 CATCTTCATTGCATTTGCATAGTCAAGTGGCTAATTACACTCAAGATTTGGAATCAGGAG 777
|||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 862 CATCTTCATTGCATTTACATAGTCAAGTCGCTAATTACACGCAAGATTTGAAATCAGGAG 921
Query 778 CCAAAACTGTCTTGACTCTGTTTCCAACTCGAGACGATTGAATTAT-AGTAAAC 830
||||||| |||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 922 CCAAAACGGTCTTGACTCTGTTTCCAACTCGAGACGATTGAATTTTTATTAAAC 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40890595658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5