BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939927
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05110.1 | Symbols: | Cystatin/monellin family protein | ch... 1046 0.0
> AT5G05110.1 | Symbols: | Cystatin/monellin family protein |
chr5:1507419-1508867 REVERSE LENGTH=997
Length=997
Score = 1046 bits (566), Expect = 0.0
Identities = 687/745 (92%), Gaps = 9/745 (1%)
Strand=Plus/Plus
Query 2 GAGAAGCTCACTGGGAACAATGGATATGAGACGTTCATCGGCGTGGATGATTTTGATTTG 61
||||||||||||| |||||||||||||||||||| | ||| ||| ||||| || |||||
Sbjct 84 GAGAAGCTCACTGAGAACAATGGATATGAGACGTGCTTCGATGTGTATGATGTTAATTTG 143
Query 62 CGTGTCGTTGGTTCTCCTTTCTGGATTTGGCCAGTTTGTGATCTGCAGTGAAGAAAAAGC 121
||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 144 CGTCTCCTTGGTTCTCCTTTCGGGTTTTGGCCAGTTTGTGATCTGCAGTGAAGAAAAAGG 203
Query 122 AACGTACAACGACCACAACAACAACGTTGTAAGGATGCAGCTTGGTGGATTTAGCGATTC 181
||||||||||| ||||||| |||| |||| ||||||||||||||||||||||
Sbjct 204 AACGTACAACG---------ACAACGTCGTAAAGATGAAGCTTGGTGGATTTAGCGATTC 254
Query 182 CACGAATAATCGTAACGGTGGGGAAGAGATCGATGATATTGCACTCTTCGCTGTTCAAGA 241
|| ||| || | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 255 CAAGAACGATTGGAACGGTGGAAAAGAGATCGATGATATTGCACTCTTCGCTGTTCAAGA 314
Query 242 ACACAACAGACGAGAGAATGTTGTTCTTGAGCTTGCTAGAGTATTGAAGGCAACAGAGCA 301
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 315 GCACAACAGACGAGAGAATGCTGTTCTTGAGCTTGCTAGAGTATTGAAGGCAACAGAGCA 374
Query 302 GGTTGTTGCTGGCAAGCTCTATCGTCTTACTCTTGAAGTTATTGAAGCTGGTGAGAAGAA 361
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 375 GGTGGTTGCTGGCAAGCTATACCGTCTTACTCTTGAAGTTATTGAAGCTGGTGAGAAAAA 434
Query 362 GATTTATGAAGCTAAAGTTTGGGTGAAGCCATGGATGAACTTCAAGCAGCTTCAGGAGTT 421
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 435 GATTTATGAAGCTAAAGTTTGGGTGAAGCCATGGATGAACTTTAAGCAGCTTCAGGAGTT 494
Query 422 CAAGAATGTTATCCCCTCCTTCACTATCTCTGACCTTGGCTTGAAATCAGATGGTAATGG 481
||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 495 CAAGAATATTATCCCCTCCTTCACTATCTCTGACCTTGGCTTCAAACCAGATGGCAATGG 554
Query 482 ATTTGACTGGAGATCAGTATCAACAAATAACCTTGAAGTACAAGAGGCAGCAAAGCAAGC 541
|||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||| ||
Sbjct 555 ATTTGACTGGAGATCAGTATCAACAAATAACCCTGAAGTCCAAGAAGCAGCGAAGCACGC 614
Query 542 AATGAAATCACTTCAACAGAAATCAAATTCACTGTTCCCCTATAAACTCATAGATATAAT 601
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 615 CATGAAATCACTTCAACAGAAATCAAACTCACTGTTCCCCTATAAACTCATAGATATAAT 674
Query 602 CCTAGCCAGGGCAAAGGTGGTTGAAAACCGTGTGAAATTCGAACTGCTTCTGAAGCTAGA 661
||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 675 CCTAGCCAGGGCAAAGGTGGTTGAAGAGCGTGTGAAATTCGAACTGCTGCTGAAGCTAGA 734
Query 662 GAGGGGCAACAAACTGGAGAGGTTGATGGTTGAAGTGATGAAGGATCAAAACGGCAAGTA 721
|||||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||
Sbjct 735 GAGGGGCAACAAACTGGAGAAGTTCATGGTAGAAGTGATGAAGGATCAAACCGGCAAGTA 794
Query 722 TCAGTAGAAGTTGCAGATAGCTTTT 746
| |||||||||||||||||||||||
Sbjct 795 TGAGTAGAAGTTGCAGATAGCTTTT 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5