BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939941
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05220.1 | Symbols: | unknown protein; Has 30201 Blast hits... 830 0.0
> AT5G05220.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1550267-1550928
FORWARD LENGTH=662
Length=662
Score = 830 bits (449), Expect = 0.0
Identities = 545/589 (93%), Gaps = 15/589 (3%)
Strand=Plus/Plus
Query 15 AAAACAATGGAAGCTATCTCTCAAACCTGCACAAAGATCATCACCAACTCATCTTC-GAG 73
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 1 AAAACAATGGAAGCTATCTCTCAAACCTGCACAAAGATCATCACCAACCCATC-TCAGAG 59
Query 74 AACATATAAAACCTCATCTTCGGTCACGGCAATCCCACAGACCAAGCTGAGCCTTAAAGC 133
| |||||||||||||||| | ||||||||||| ||||| || ||||||||||||||||
Sbjct 60 GATATATAAAACCTCATCTCCAGTCACGGCAATTCCACAAACAAAGCTGAGCCTTAAAGT 119
Query 134 CAAGAAGGAGAGGTGGGTTGCTGCTGCTAGATGCGTGGCTTCAGGGTCGGGTTATGCGGC 193
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 120 CAAGAAGGAGAGGTGGGTTGCTGCTGCTAGATGCGTGGCTTCAGGATCGGATTATGCTGC 179
Query 194 GGCAATGGAGCCAATTACACCGGAGGAAGAGGAGGAATTGACTCAGAGAAGAGGTATATG 253
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 GGCAATGGAGCCAATTACGCCGGAGGAAGAGGAGGAATTGACTCAGAGAAGAGGGATATG 239
Query 254 TGGCGGAGAAGCAAACAGAGGAGTATGGGAGCTCTTGGAGTGCCTTGAGAAGGAAGCTAT 313
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TGGTGGAGAAGTAAACAGAGGAGTATGGGAGCTCTTGGAGTGCCTTGAGAAAGAAGCTAT 299
Query 314 TATGGGTG-ATGATGATGGGAGAGACCCTACAGATTACAATAGAAGAGCGAAGATTTTCG 372
|||||| | |||||||||||||||| |||| |||||||||||||||||| |||||||| |
Sbjct 300 TATGGG-GAATGATGATGGGAGAGATCCTAGAGATTACAATAGAAGAGCAAAGATTTTTG 358
Query 373 ACAAGAGTTCTAAGATCTTCAAGAACTCTAAA-GAACAGAGAGATCAGTCTCCTGTGGAG 431
||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||
Sbjct 359 ACAAGAGTTCTAAGATCTTCAAGAACT-TAAATGAACAGAGAGATCAGGCTCCTGTTGAT 417
Query 432 TACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGG-AGAGACCCTAAAGATTATAA 490
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 418 TACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGGAAG-GACCCTAAAGATTATAA 476
Query 491 CAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATATTCAAGAACATCAAAGAACAGAG 550
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 CAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATCTTCAAGAACATCAAAGAACAGAG 536
Query 551 AGACCAGTCTTCTCCAGAATAAATATA--AAAATTGTTGTCTGTTTGTT 597
||| |||||| | | ||||| ||| || ||||| || || ||||||||
Sbjct 537 AGAGCAGTCT-C-C-AGAATGAAT-TACGAAAAT-GTAGTTTGTTTGTT 580
Score = 165 bits (89), Expect = 5e-40
Identities = 118/132 (89%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 427 TGGAGTACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGGAGAGACCCTAAAGATT 486
|||||| ||||||||| |||||||| |||||| ||||||||||||||| |||| |||||
Sbjct 275 TGGAGTGCCTTGAGAAAGAAGCTATTATGGGGAATGATGATGGGAGAGATCCTAGAGATT 334
Query 487 ATAACAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATATTCAAGAACATCAAA-GAA 545
| || ||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||
Sbjct 335 ACAATAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATCTTCAAGAACTT-AAATGAA 393
Query 546 CAGAGAGACCAG 557
|||||||| |||
Sbjct 394 CAGAGAGATCAG 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5