BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939941 Length=618 Score E Sequences producing significant alignments: (Bits) Value AT5G05220.1 | Symbols: | unknown protein; Has 30201 Blast hits... 830 0.0 > AT5G05220.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1550267-1550928 FORWARD LENGTH=662 Length=662 Score = 830 bits (449), Expect = 0.0 Identities = 545/589 (93%), Gaps = 15/589 (3%) Strand=Plus/Plus Query 15 AAAACAATGGAAGCTATCTCTCAAACCTGCACAAAGATCATCACCAACTCATCTTC-GAG 73 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 1 AAAACAATGGAAGCTATCTCTCAAACCTGCACAAAGATCATCACCAACCCATC-TCAGAG 59 Query 74 AACATATAAAACCTCATCTTCGGTCACGGCAATCCCACAGACCAAGCTGAGCCTTAAAGC 133 | |||||||||||||||| | ||||||||||| ||||| || |||||||||||||||| Sbjct 60 GATATATAAAACCTCATCTCCAGTCACGGCAATTCCACAAACAAAGCTGAGCCTTAAAGT 119 Query 134 CAAGAAGGAGAGGTGGGTTGCTGCTGCTAGATGCGTGGCTTCAGGGTCGGGTTATGCGGC 193 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || Sbjct 120 CAAGAAGGAGAGGTGGGTTGCTGCTGCTAGATGCGTGGCTTCAGGATCGGATTATGCTGC 179 Query 194 GGCAATGGAGCCAATTACACCGGAGGAAGAGGAGGAATTGACTCAGAGAAGAGGTATATG 253 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 180 GGCAATGGAGCCAATTACGCCGGAGGAAGAGGAGGAATTGACTCAGAGAAGAGGGATATG 239 Query 254 TGGCGGAGAAGCAAACAGAGGAGTATGGGAGCTCTTGGAGTGCCTTGAGAAGGAAGCTAT 313 ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 240 TGGTGGAGAAGTAAACAGAGGAGTATGGGAGCTCTTGGAGTGCCTTGAGAAAGAAGCTAT 299 Query 314 TATGGGTG-ATGATGATGGGAGAGACCCTACAGATTACAATAGAAGAGCGAAGATTTTCG 372 |||||| | |||||||||||||||| |||| |||||||||||||||||| |||||||| | Sbjct 300 TATGGG-GAATGATGATGGGAGAGATCCTAGAGATTACAATAGAAGAGCAAAGATTTTTG 358 Query 373 ACAAGAGTTCTAAGATCTTCAAGAACTCTAAA-GAACAGAGAGATCAGTCTCCTGTGGAG 431 ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| || Sbjct 359 ACAAGAGTTCTAAGATCTTCAAGAACT-TAAATGAACAGAGAGATCAGGCTCCTGTTGAT 417 Query 432 TACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGG-AGAGACCCTAAAGATTATAA 490 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 418 TACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGGAAG-GACCCTAAAGATTATAA 476 Query 491 CAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATATTCAAGAACATCAAAGAACAGAG 550 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 477 CAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATCTTCAAGAACATCAAAGAACAGAG 536 Query 551 AGACCAGTCTTCTCCAGAATAAATATA--AAAATTGTTGTCTGTTTGTT 597 ||| |||||| | | ||||| ||| || ||||| || || |||||||| Sbjct 537 AGAGCAGTCT-C-C-AGAATGAAT-TACGAAAAT-GTAGTTTGTTTGTT 580 Score = 165 bits (89), Expect = 5e-40 Identities = 118/132 (89%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 427 TGGAGTACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGGAGAGACCCTAAAGATT 486 |||||| ||||||||| |||||||| |||||| ||||||||||||||| |||| ||||| Sbjct 275 TGGAGTGCCTTGAGAAAGAAGCTATTATGGGGAATGATGATGGGAGAGATCCTAGAGATT 334 Query 487 ATAACAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATATTCAAGAACATCAAA-GAA 545 | || ||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||| Sbjct 335 ACAATAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATCTTCAAGAACTT-AAATGAA 393 Query 546 CAGAGAGACCAG 557 |||||||| ||| Sbjct 394 CAGAGAGATCAG 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29788849171 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5