BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939945
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05250.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1079 0.0
> AT5G05250.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G56360.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:1557037-1557998 REVERSE LENGTH=962
Length=962
Score = 1079 bits (584), Expect = 0.0
Identities = 714/774 (92%), Gaps = 20/774 (3%)
Strand=Plus/Plus
Query 1 AATCTCATCACCGGGG--AAA-T-ATGGCGTATGCAAAAATCGGTTACGGTGGAAGTTAT 56
|||||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||
Sbjct 140 AATCTCATCACCGGGGTAAAATTAATGGCGTATGCAAAGATCGGTTACGGTGGAAGTTAT 199
Query 57 CTAGTGCAACGCGGCGCATTGGAGCATCCGTGTGTATCCGATCATAATACGAGATTGCTT 116
||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||| ||
Sbjct 200 CTAGTGCAACGCGGCATATTGGAGTATCCGTGTGGATCCGATCATAATGCGAGATTGATT 259
Query 117 TCATCGTCGTTCCCGATCAGTCTAGGCGGTACTCGGCGATCTAGCGTTGGAACGATCACA 176
||||||||||| ||||| | ||||||||||| ||| ||||||||| | ||||| ||| |
Sbjct 260 TCATCGTCGTTTCCGATTAATCTAGGCGGTAATCGACGATCTAGCATCGGAACAATCTCG 319
Query 177 GCGTCGATAGCGGAGACCGTAACggagatagagaaacagagaggtggaagaagaagcgga 236
|||||||||| |||| | || || ||||||||||||||||||||||||||||||||||||
Sbjct 320 GCGTCGATAGGGGAGGCTGTGACTGAGATAGAGAAACAGAGAGGTGGAAGAAGAAGCGGA 379
Query 237 gggagaagcagaggaggtggaggagatagtagagcggtggagGCGGAGCGTGAGAAGCTA 296
||||||||| | |||||||| || | | |||||| ||||||||||||||||||
Sbjct 380 GGGAGAAGC-----A----GAGGAGATCGTTGGGAGGTGGAAGCGGAGCGTGAGAAGCTA 430
Query 297 GACAGGTGGATGAAGGAATCGGTGACGGAGATCGTTAAGAATTTAAGTGAAGCGCCGTTG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GACAGGTGGATGAAGGAATCGGTGACGGAGATCGTTAAGAATTTAAGTGAAGCGCCGTTG 490
Query 357 TTAGTCCATTTGTACACCGGAGATAAGGAGGAGGGAACGGTGGTTGTGATGAAAGCGGAG 416
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 491 TTAGTCCATTTGTACACCGGAGATAAGGAGGAGGGAACGGTAGTTGTGATGAAAGCAGAG 550
Query 417 GAATGGGCGGCGGTGAAAGGGAGATGGAAGAGAGGAGAGGCGGAGATGCCGGAAGGAATT 476
||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 551 GAATGGGCGGCGGTGAAGGGGAGGTGGGAGAGAGGAGAGGCGGAGATGCCGGAAGGGATA 610
Query 477 GTGTTCGTGGAGCAGTTAGGAGCGGCGGAGGAGAGTTGTGGCTGTGGTTTTGACGGTGGA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GTGTTCGTGGAGCAGTTAGGAGCGGCGGAGGAGAGTTGTGGCTGTGGTTTTGACGGTGGA 670
Query 537 GACGGCACACGTGCGTGGGGGTTGGTGGTGCAAGGGAAAGCAGTTGAGTGTGGGCCGGTT 596
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 671 GACGGCACACGTGCGTGGGGGTTGGTGGTGCAAGGGAGAGGAGTTGAGTGTGGGCCGGTT 730
Query 597 TGTTATCTGCTTAAGACGACCCGTGTCGGGTCAGTGTCAGGGTCAGGGTCCGGGTCGGGT 656
|||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||
Sbjct 731 TGTTATCTGCTTAAGACGACCCGTGTAGGGTCAGGGTCAGG---A---TCCGGGTCGGGT 784
Query 657 TTGGCTATGCGGTGTACGCATTTCTGTTTAGCTAAGGTGTCGAGTTTTAGAGAGACTAGT 716
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TTGGGTATGCGGTGTACGCATTTCTGTTTAGCTAAGGTGTCGAGTTTTAGAGAGACTAGT 844
Query 717 GAATCTCAGCTTAGGAATTGTTGGCTTGTGGGGAATTGATAATGAAGCCCTTTG 770
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 845 GAATCTCAGCTTAGGAATTGTTGGCTTGTGGGAAATTGATAATGAAGCC-TTTG 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5