BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939949
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05290.1 | Symbols: ATEXPA2, EXP2, ATEXP2, ATHEXP ALPHA 1.12... 1234 0.0
AT5G56320.1 | Symbols: ATEXPA14, EXP14, ATEXP14, ATHEXP ALPHA 1... 178 8e-44
AT3G55500.1 | Symbols: ATEXPA16, EXP16, ATEXP16, ATHEXP ALPHA 1... 148 6e-35
> AT5G05290.1 | Symbols: ATEXPA2, EXP2, ATEXP2, ATHEXP ALPHA 1.12,
EXPA2 | expansin A2 | chr5:1568694-1569864 FORWARD LENGTH=978
Length=978
Score = 1234 bits (668), Expect = 0.0
Identities = 761/805 (95%), Gaps = 9/805 (1%)
Strand=Plus/Plus
Query 1 TCTTTAGCCCCTCAGCAAA-ATCATGAAGCTTACAGAATATTCCCATATTTTATTTCTTT 59
|||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 36 TCTTTAGCCCATCAGCAAATATCATGAATCTTACAGAATATTCCCATATTTTGTTTCTTT 95
Query 60 CACTATTCACCATCAACTTCTAC----A-T-TATAAACTCCGACGACAACGGAGGCTGGG 113
|||||| |||| ||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 96 CACTATGCACCCTCAACTTCTGCTTGTACTCCATAAACTCCGACGACAACGGAGGCTGGG 155
Query 114 AGAGAGGCCATGCTACCTTCTACGGTGGAGATGATGCATCCGGCACAATGGGTGGTGCTT 173
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 156 AGAGAGGCCATGCTACCTTCTATGGTGGAGCTGATGCATCCGGCACAATGGGTGGTGCTT 215
Query 174 GTGGGTACGGTAACTTACACAGCCAAGGCTATGGGCTACAAACCGCGGCTTTGAGCACGG 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GTGGGTACGGTAACTTACACAGCCAAGGCTATGGGCTACAAACCGCGGCTTTGAGCACGG 275
Query 234 CTTTGTTCAATAGTGGGCAGAAATGTGGGGCCTGCTTTGAGCTACAATGTGAGGATGATC 293
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 276 CTTTGTTCAATAGTGGGCAGAAATGTGGGGCCTGCTTTGAGCTACAGTGTGAGGATGATC 335
Query 294 CTGAGTGGTGCATCCCTGGTTCCATCATCGTCTCAGCTACAAACTTCTGTCCTCCAAACT 353
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 336 CTGAGTGGTGCATCCCTGGTTCCATCATCGTCTCGGCTACAAACTTCTGTCCTCCAAACT 395
Query 354 TTGCCTTAGCCAATGATAATGGTGGTTGGTGCAATCCTCCTCTCAAGCACTTTGACTTGG 413
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 396 TTGCCTTAGCTAATGATAATGGTGGTTGGTGCAATCCTCCTCTTAAGCACTTTGACTTGG 455
Query 414 CCGAGCCTGCCTTCCTCCAGATCGCTCAGTACCGGGCTGGAATCGTTCCTGTCGCATTCA 473
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 456 CCGAGCCTGCCTTCCTCCAGATCGCTCAGTACCGAGCTGGGATCGTTCCTGTCGCATTCA 515
Query 474 GAAGGGTTCCATGTGAGAAAGGTGGAGGGATAAGGTTCACGATCAACGGGAATCCGTATT 533
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 516 GAAGGGTTCCATGTGAGAAAGGTGGAGGGATAAGGTTTACGATAAACGGGAATCCATATT 575
Query 534 TCGACCTCGTGTTGATCACAAACGTGGGTGGTGCTGGAGATGTTAGGGCCGTCTCTTTGA 593
||||||||||| | ||||| || |||||||||||||||||| | ||||||||||||||||
Sbjct 576 TCGACCTCGTGCTAATCACGAATGTGGGTGGTGCTGGAGATATAAGGGCCGTCTCTTTGA 635
Query 594 AAGGCTCAAAGACTGATCAGTGGCAATCCATGTCAAGAAACTGGGGACAGAATTGGCAAA 653
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 AAGGCTCAAAGACAGATCAGTGGCAATCCATGTCAAGAAACTGGGGACAGAATTGGCAAA 695
Query 654 GCAACACTTACCTCAGAGGGCAAAGCCTATCTTTTCAAGTCACTGCTAGTGATGGTCAGA 713
||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||| ||
Sbjct 696 GCAACACTTACCTCAGAGGTCAAAGCCTTTCTTTCCAAGTCACTGATAGTGATGGTCGGA 755
Query 714 CTGTTGTGAGCTACGATGTTGTGCCTCAGGATTGGCAGTTCGGTCAAACTTTTGAAGGTG 773
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 756 CTGTTGTGAGCTACGATGTTGTGCCTCATGATTGGCAGTTCGGTCAGACTTTTGAAGGCG 815
Query 774 GACAATTCTAGATT-ATGTACCAAG 797
||||||| |||||| ||| | ||||
Sbjct 816 GACAATTTTAGATTTATG-ATCAAG 839
> AT5G56320.1 | Symbols: ATEXPA14, EXP14, ATEXP14, ATHEXP ALPHA
1.5, EXPA14 | expansin A14 | chr5:22808641-22810237 FORWARD
LENGTH=1203
Length=1203
Score = 178 bits (96), Expect = 8e-44
Identities = 401/544 (74%), Gaps = 37/544 (7%)
Strand=Plus/Plus
Query 131 TTCTACGGTGGAGATGATGCATCCGGCACAATGGGTGGTGCTTGTGGGTACGGTAACTTA 190
||||| || |||| |||||| || ||||| ||||| || || ||||| ||||| ||||||
Sbjct 210 TTCTATGGAGGAGCTGATGCTTCTGGCACCATGGGCGGCGCGTGTGGTTACGGAAACTTA 269
Query 191 CACAGCCAAGGCTATGGGCTAC-AA-ACCGCGGCTTTGAGCACGGCTTTGTTCAATAGTG 248
|||| ||||| || ||| || || || |||||| | ||||||||| | ||||| | |
Sbjct 270 TACAGTCAAGGATA-CGGC-ACTAACACGGCGGCTCTAAGCACGGCTCTATTCAACGGCG 327
Query 249 GGCAGAA-ATGTGGGGCCTGCTTTGAGCTACAATGTG-AGGATGATCCTGAGTGGTGCAT 306
| || || ||||| || || ||| || || |||| | | || || || | ||||| ||
Sbjct 328 GCCA-AAGCTGTGGTGCTTGTTTTCAGATAAAATGCGTA-GACGACCCAAAATGGTGTAT 385
Query 307 CCCTGGTTCCATCATCGTCTCAGCTACAAACTTCTGTCCTCCAAACTTTGCCT-TAGCCA 365
| ||| | |||| |||| | | |||||||| ||||| || ||||||| || |||||
Sbjct 386 CGGTGGAACAATCACCGTCACCGGAACAAACTTTTGTCCACCCAACTTTG-CTCAAGCCA 444
Query 366 ATGATAATGGTGGTTGGTGCAATCCTCCTCTCA-AGCACTTTGACTTGGC-CGAGCCTGC 423
| | || |||||||| |||||||||| | | ||||| || || || | ||||
Sbjct 445 ACAACGCCGGAGGTTGGTGTAATCCTCCTC-AACACCACTTCGATTTAGCTC-AGCCCAT 502
Query 424 CTTCCTCCAG-ATCGCTCAGTACCGGGCTGGAATCGTTCCTGTCGC-AT-TCAGA-AG-G 478
|||||||| | || ||||| ||| || || |||| |||||| | || | || || |
Sbjct 503 CTTCCTCC-GTATTGCTCAATACAAAGCCGGCGTCGTCCCTGTC-CAATACCGGAGAGTG 560
Query 479 G-TT-CCATGTGAGAAAGGTGGAGGGATAAGGTTCACGATCAACGGGAATCCGTATTTCG 536
| || || | |||||| ||||| ||||| |||||||||||||| || | || |||
Sbjct 561 GCTTGCC--G-GAGAAA--AGGAGGAATAAGATTCACGATCAACGGTCATTCATACTTCA 615
Query 537 ACCTCGT-GTTGATCACAAACGTGGGTGGTGCTGGAGATGTTAGGGCCGTCT-CTTTGAA 594
||||||| || || || ||||| | || || |||||||||| |||||| | || ||
Sbjct 616 ACCTCGTACTT-ATAACCAACGTCGCCGGCGCCGGAGATGTTATCTCCGTCTCCATT-AA 673
Query 595 AGGCTCAAAGACTGATCAG-TGGCAATCCATGTCAAGAAACTGGGGACAGAATTGGCAAA 653
||| | || || | | | |||||| ||||||||||||||||||||||||||||||||
Sbjct 674 AGGAACCAATAC--A-C-GTTGGCAAAGCATGTCAAGAAACTGGGGACAGAATTGGCAAA 729
Query 654 GCAA 657
||||
Sbjct 730 GCAA 733
> AT3G55500.1 | Symbols: ATEXPA16, EXP16, ATEXP16, ATHEXP ALPHA
1.7, EXPA16 | expansin A16 | chr3:20574831-20576182 REVERSE
LENGTH=1105
Length=1105
Score = 148 bits (80), Expect = 6e-35
Identities = 339/461 (74%), Gaps = 30/461 (7%)
Strand=Plus/Plus
Query 131 TTCTACGGTGGAGATGATGCATCCGGCACAATGGGTGGTGCTTGTGGGTACGGTAACT-T 189
|||||||||||| | ||||| || || ||||||||||| || ||||| ||||| || | |
Sbjct 201 TTCTACGGTGGAAACGATGCTTCGGGAACAATGGGTGGCGCGTGTGGATACGGGAA-TCT 259
Query 190 ACACAGCCAAGGCTATGGGCTACAAAC-C-GCGGCTTTGAGCACGGCTTTGTTCAATAGT 247
| |||||||| || || |||||| | ||||| ||||||| | ||||| || |||
Sbjct 260 GTATAGCCAAGGATA-CGG-AACAAACACGGCGGCGCTGAGCACATCGTTGTTTAACAGT 317
Query 248 GGGCAGAA-ATGTGGGGCCTGCTTTGAGCTAC-AATGTGAGGATGATCCTGAGTGGTG-C 304
|| || || || || || ||||| || | | |||||| ||||||| | ||||| |
Sbjct 318 GGTCA-AAGCTGCGGCGCATGCTTCGAAAT-CAAATGTGTCAATGATCCCAAATGGTGTC 375
Query 305 ATCCCTGGT--TCCATC-ATCGTC-T--CAGCTACAAACTTCTGTCCTCCAAACTTTGCC 358
| ||| ||| ||| || || || | | || || ||||| || ||||||||||| |||
Sbjct 376 A-CCCGGGTAATCCTTCTGTCTTCGTAACCGCAACCAACTTTTGCCCTCCAAACTTAGCC 434
Query 359 TTAGCC-AATGATAATGGTGGTTGGTGCAATCCTCCTCTCAAGCACTTT-GACTTGGCCG 416
|||| | || |||||||| |||||||| || || | | || ||| ||| | |||
Sbjct 435 -CAGCCTAGCGACAATGGTGGCTGGTGCAACCCGCCACGCTCTCA-TTTCGACCTCGCC- 491
Query 417 A-GCCTGCCTTCCTCCAGATCGCTCAGTACCGGGCTGGAATCGTTCCTGTCGCATT-CAG 474
| ||| | |||||| |||||||| |||| || || || || || || || | || | |
Sbjct 492 ATGCCCGTTTTCCTCAAGATCGCTGAGTATCGTGCCGGCATTGTCCCCATCTC-TTACCG 550
Query 475 AAGGGTTCCATGTGAGAAAG-GTGGAGGGATAAGGTTCACGATCAACGGGAATCCGT-AT 532
||||| ||||| || ||| |||||||||||||||||||||||||||| | |||| |
Sbjct 551 CAGGGTGGCATGT-AGGAAGAGTGGAGGGATAAGGTTCACGATCAACGGTCA-CCGTTAC 608
Query 533 TTCGACCTCGTGTTGATCACAAACGTGGGTGGTGCTGGAGA 573
||| || | ||| |||| || ||||||| || || |||||
Sbjct 609 TTCAACTTGGTGCTGATTACGAACGTGGCCGGAGCAGGAGA 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5