BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939950 Length=322 Score E Sequences producing significant alignments: (Bits) Value AT5G05300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 327 3e-89 > AT5G05300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1570102-1570410 REVERSE LENGTH=309 Length=309 Score = 327 bits (177), Expect = 3e-89 Identities = 269/308 (87%), Gaps = 27/308 (9%) Strand=Plus/Plus Query 21 ATGGCTAGAATTGGAGCTTTGATTCTAGTTTTATTCATCTCCTTCTCTCAGCTTGCTTCG 80 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGGCTAGAATTGGAGCTTTGATTCTAGTTTTATTCATCTCCATCTCTCAGCTTGCTTCG 60 Query 81 TTTTCAACTGCTAGGAAA-------T-----TTCCGTCGGTAATTGATGGCGTCATCTTC 128 || ||||| ||||||||| | ||||||||||||| ||||||||||||||| Sbjct 61 TTCTCAACAGCTAGGAAATTTCCGGTAGGAATTCCGTCGGTAATCGATGGCGTCATCTTC 120 Query 129 CCCGGGGAGATCTCTGTTGTCTCC---AA---GACGGTGGTAGGGTGCGAAGGCGAGGAT 182 |||| |||||||||| ||||||| || |||||||||||||||||||||||||||| Sbjct 121 TCCGGAGAGATCTCTGCTGTCTCCAAGAAGGTGACGGTGGTAGGGTGCGAAGGCGAGGAT 180 Query 183 GATCACTT--C-AC-GG-----CGTCGTATGTCTCCGGAAAATTTGGGTCGTTGGTGTTG 233 |||||||| | | || |||||||| || |||||||||||||||||||||||||| Sbjct 181 GATCACTTGACGGCTGGATATTCGTCGTATATCACCGGAAAATTTGGGTCGTTGGTGTTG 240 Query 234 AACGCTCTTCCGAGAGGGTCAGTTCCGGCGTCTGGACCCAGCAAGAGAATCAACGACGTC 293 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AACGCTCTTCCAAAAGGGTCAGTTCCGGCGTCTGGACCCAGCAAGAGAATCAACGACGTC 300 Query 294 AAGACTTA 301 |||||||| Sbjct 301 AAGACTTA 308 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14979789202 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5