BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939950

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05300.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   327    3e-89


> AT5G05300.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant 
structures; EXPRESSED DURING: 8 growth stages; Has 1807 Blast 
hits to 1807 proteins in 277 species: Archae - 0; Bacteria 
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; 
Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1570102-1570410 
REVERSE LENGTH=309
Length=309

 Score =  327 bits (177),  Expect = 3e-89
 Identities = 269/308 (87%), Gaps = 27/308 (9%)
 Strand=Plus/Plus

Query  21   ATGGCTAGAATTGGAGCTTTGATTCTAGTTTTATTCATCTCCTTCTCTCAGCTTGCTTCG  80
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1    ATGGCTAGAATTGGAGCTTTGATTCTAGTTTTATTCATCTCCATCTCTCAGCTTGCTTCG  60

Query  81   TTTTCAACTGCTAGGAAA-------T-----TTCCGTCGGTAATTGATGGCGTCATCTTC  128
            || ||||| |||||||||       |     ||||||||||||| |||||||||||||||
Sbjct  61   TTCTCAACAGCTAGGAAATTTCCGGTAGGAATTCCGTCGGTAATCGATGGCGTCATCTTC  120

Query  129  CCCGGGGAGATCTCTGTTGTCTCC---AA---GACGGTGGTAGGGTGCGAAGGCGAGGAT  182
             |||| |||||||||| |||||||   ||   ||||||||||||||||||||||||||||
Sbjct  121  TCCGGAGAGATCTCTGCTGTCTCCAAGAAGGTGACGGTGGTAGGGTGCGAAGGCGAGGAT  180

Query  183  GATCACTT--C-AC-GG-----CGTCGTATGTCTCCGGAAAATTTGGGTCGTTGGTGTTG  233
            ||||||||  |  | ||     |||||||| || ||||||||||||||||||||||||||
Sbjct  181  GATCACTTGACGGCTGGATATTCGTCGTATATCACCGGAAAATTTGGGTCGTTGGTGTTG  240

Query  234  AACGCTCTTCCGAGAGGGTCAGTTCCGGCGTCTGGACCCAGCAAGAGAATCAACGACGTC  293
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AACGCTCTTCCAAAAGGGTCAGTTCCGGCGTCTGGACCCAGCAAGAGAATCAACGACGTC  300

Query  294  AAGACTTA  301
            ||||||||
Sbjct  301  AAGACTTA  308



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5