BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939954
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05680.1 | Symbols: MOS7 | nuclear pore complex protein-rela... 815 0.0
> AT5G05680.1 | Symbols: MOS7 | nuclear pore complex protein-related
| chr5:1698270-1702645 FORWARD LENGTH=2698
Length=2698
Score = 815 bits (441), Expect = 0.0
Identities = 505/536 (94%), Gaps = 3/536 (1%)
Strand=Plus/Plus
Query 2 CCAGATTCACGGCGATATCCGATGCCTAAAGAGCCGGTTCGGTGGGTTCCTCTCCAGAGC 61
||||||||||| |||| ||||| ||| |||||||||||| ||||||||||||||||||||
Sbjct 129 CCAGATTCACGACGATCTCCGACGCCCAAAGAGCCGGTTAGGTGGGTTCCTCTCCAGAGC 188
Query 62 CACCCGGTTTTCGCTTCTCTTCCATCCTCCCAGGATGAACTCGCCGCGTCGCAGCGT-TT 120
||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||| | ||
Sbjct 189 CACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAGATGAACCCGCCGTGTCGCAGC-TGTT 247
Query 121 TCCGAGAAATTTGATGGCTTGGGACGGAGACTGGCGCCTATACTACTGGGATTCTAAACG 180
|||||||||||| ||||||||||||||||||| |||| |||||||||||||||| | |||
Sbjct 248 TCCGAGAAATTTCATGGCTTGGGACGGAGACTCGCGCGTATACTACTGGGATTCGAGACG 307
Query 181 ATATCTCCTTCACCGATTATCTCTGCGCTTGGGTGAGCCTGAACCATCATCCGTCCTCGC 240
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 308 ATATCTCCTTCACCGATTATCTCTGCGCTTGGGTGAACCTGAACCATCCTCCGTCCTCGC 367
Query 241 CGCAGTCCCGTCCAAGGTGATGCAACCAGACCTTCAACTGACATTTTCTGTTAGCAAAAT 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 368 CGCAGTCCCGTCCAAGGTGATGCAACCAGACCTTCAGGTGACATTTTCTGTTAGCAAAAT 427
Query 301 CTCCATTAATAAGTCTGGATCAGCTGTACTTCTTGCCGGCTCAGATGGAATATGTGTGAT 360
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 428 CTCCATCAATAAGTCTGGATCAGCTGTACTTCTTGCCGGCTCAGATGGGATATGTGTGAT 487
Query 361 GTACCTATTTGGACGTGCTTCTGTGGTAGAATACAATATCATTTGCAGGGTAGTTTCTAT 420
||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 488 GTACCTATTTGGACGTGCTTCTGTGATAGAAGACAATGTCATTTGCAGGGTAGTTTCTAT 547
Query 421 TGGTTCAGAAATCTATACTAGTGGTGACAATGCCATAAACTTGCTACAAGCATTGTGGCA 480
|||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||
Sbjct 548 TGGTTCAGAAATCTATACTAGTAGTGACAGTGCCATAACCTTGCTACAAGCATCGTGGCA 607
Query 481 CCCTGATAGTGACACCCATTTGGAAATTCTATCCTCGGATGCAGTTTTCAG-CTTT 535
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 608 CCCTGATAGTGACACCCATTTGGGAATTCTATCCTCGGATGCAGTTTTCAGGCTTT 663
Score = 379 bits (205), Expect = 2e-104
Identities = 215/220 (98%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 655 GCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCATCCTTATGCTTTGCTTGA 714
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1004 GCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCAGCCTTATGCTTTGCTTGA 1063
Query 715 CGCATCATTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGATGAAGA 774
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 CGCATCACTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGATGAAGA 1123
Query 775 TTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATCATATAATCTTGT 834
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1124 TTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATTATATAATCTTGT 1183
Query 835 CAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCAGGA 874
||||||||||||||||||||||||||||||||||| |||
Sbjct 1184 TAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCTGGA 1223
Score = 100 bits (54), Expect = 2e-20
Identities = 65/70 (93%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 582 TCTTTATATTATTCACTGATGGTTCAATTTATATCCTGTGCCCAGTTGTGCCATTTGGAA 641
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 805 TCTTTATATTATTCACTGATGGTTCAATTTATATCTTATGCCCCGTTGTGCCATTTGGAA 864
Query 642 GA-TTTACAA 650
| |||||||
Sbjct 865 GTGTTTACAA 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5