BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939957
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05340.1 | Symbols: | Peroxidase superfamily protein | chr5... 1659 0.0
AT5G35111.1 | Symbols: | pseudogene, similar to peroxidase 6, ... 104 2e-21
AT1G47705.1 | Symbols: | pseudogene, similar to peroxidase 6, ... 76.8 4e-13
> AT5G05340.1 | Symbols: | Peroxidase superfamily protein | chr5:1578951-1580875
REVERSE LENGTH=1222
Length=1222
Score = 1659 bits (898), Expect = 0.0
Identities = 979/1019 (96%), Gaps = 1/1019 (0%)
Strand=Plus/Plus
Query 1 TCAAGTCTTTGTTTTAACCT-ACAATGGCTTCAAATCAACTTACTGCCATTCTAGTTCTC 59
|||||||||||||||||||| ||||||||||||||| |||||| | | ||||||||||||
Sbjct 33 TCAAGTCTTTGTTTTAACCTAACAATGGCTTCAAATAAACTTATTTCGATTCTAGTTCTC 92
Query 60 GTACTTACACTTTTACTCCAAGGTAATAACAATAACGTCGTCGAAGCACAACTCACTACT 119
||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 93 GTAGTTACACTTTTACTCCAAGGTGATAACAATTACGTCGTCGAAGCACAACTCACGACT 152
Query 120 AATTTCTACTCAACCTCTTGCCCTAACCTCCTCTCCACCGTCCAAAGCGCCGTTAAATCT 179
|| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 153 AACTTCTACTCAACCTCTTGCCCCAACCTCCTCTCCACCGTCCAAACCGCCGTTAAATCT 212
Query 180 GCCGTTAACAGCGAGGCTCGAATGGGTGCATCTATCCTCCGTCTCTTCTTCCACGATTGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GCCGTTAACAGCGAGGCTCGAATGGGTGCATCTATCCTCCGTCTCTTCTTCCACGATTGC 272
Query 240 TTCGTCAACGGATGTGACGGTTCGATTCTGTTAGATGACACGTCGAGCTTCACTGGAGAA 299
|| ||||||||||| |||||||||||||| |||| || ||||| |||||||| ||||||
Sbjct 273 TTTGTCAACGGATGCGACGGTTCGATTCTACTAGACGATACGTCAAGCTTCACAGGAGAA 332
Query 300 CAAAACGCGGCTCCAAACCGCAATTCAGCTCGTGGGTTTAATGTGATCGACAACATCAAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CAAAACGCGGCTCCAAACCGCAATTCAGCTCGTGGGTTTAATGTGATCGACAACATCAAA 392
Query 360 TCAGCGGTTGAGAAAGCATGTCCCGGGGTTGTGTCTTGTGCTGATATCTTAGCCATTGCA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 TCAGCGGTTGAGAAAGCATGTCCCGGGGTTGTGTCTTGTGCTGATATCTTAGCCATTGCT 452
Query 420 GCTAGAGACTCCGTCGTAGTACTTGGAGGGCCGAATTGGAATGTGAAAGTAGGAAGAAGA 479
||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 453 GCTAGAGACTCCGTCGTAGCCCTTGGAGGACCGAACTGGAATGTGAAAGTAGGAAGAAGA 512
Query 480 GATGCAAGAACGGCGAGTCAAGCGGCAGCGAATAGTAACATTCCGGCGCCGACTTCGAGT 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 513 GATGCAAGAACGGCGAGTCAAGCGGCAGCGAATAGTAACATTCCGGCACCGACTTCGAGT 572
Query 540 CTGAGCCAACTCATTAGTAGTTTCAGTGCTGTTGGACTCTCCACCAGAGATATGGTTGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 CTGAGCCAACTCATTAGTAGTTTCAGTGCTGTTGGACTCTCCACCAGAGATATGGTTGCT 632
Query 600 CTCTCCGGCGCACACACGATCGGACAATCCCGTTGCACGAACTTCCGAGCGAGAATCTAC 659
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 CTCTCTGGCGCACACACGATCGGACAATCCCGTTGCACGAACTTCCGAGCGAGAATCTAC 692
Query 660 AACGAGACAAACATCAACGCCGCCTTCGCCACCACACGTCAACGAACTTGCCCTAGAGCC 719
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 693 AACGAGACAAACATCAATGCCGCCTTCGCCACGACACGTCAACGAACTTGCCCTAGAGCC 752
Query 720 ACCGGTTCCGGCGACGGAAACCTAGCTCCACTAGACGTCACCACGGCTGCCTCTTTCGAC 779
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 753 TCCGGTTCCGGCGACGGAAACCTAGCTCCACTAGACGTCACCACGGCAGCTTCTTTCGAC 812
Query 780 AACAACTACTTCAAGAATCTCATGACTCAGAGAGGTCTCCTCCATTCCGACCAAGTGCTC 839
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 813 AACAACTACTTCAAGAATCTCATGACTCAGAGAGGGCTCCTCCATTCCGACCAAGTGCTC 872
Query 840 TTCAACGGCGGCTCCACTGACTCTATCGTCCGTGGATACAGCAACAATCCGTCGAGCTTT 899
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 873 TTCAACGGCGGCTCTACTGACTCCATCGTCCGTGGATACAGCAACAATCCGTCGAGCTTT 932
Query 900 AACTCCGACTTCGCGGCGGCGATGATAAAAATGGGTGATATCAGCCCGTTGACTGGTAGT 959
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 AACTCTGACTTCACGGCGGCGATGATAAAAATGGGTGATATCAGCCCGTTGACTGGTAGT 992
Query 960 AGCGGTGAGATCCGCAAGGTTTGCGGGAGGACCAACTGATTCAAATCTCCTCCACGTGT 1018
|||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 993 AGCGGTGAAATCCGCAAGGTTTGCGGGAGGACCAACTGATTCAAGTCTACTCCACGTGT 1051
> AT5G35111.1 | Symbols: | pseudogene, similar to peroxidase 6,
blastp match of 72% identity and 1.1e-17 P-value to GP|5002334|gb|AAD37423.1|AF149281_1|AF149281
peroxidase 6 {Phaseolus
vulgaris} | chr5:13366072-13367241 REVERSE LENGTH=1170
Length=1170
Score = 104 bits (56), Expect = 2e-21
Identities = 69/75 (92%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 441 CTTGGAGGGCCGAATTGGAATGTGAAAGTAGGAAGAAGAGATGCAAGAACGGCG-AGTCA 499
|||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 564 CTTGGAGGGCTGAATTGG-ATGTGAAAGTAGGAAGAAGAGATGCAAGAACGGGGGAGTCA 622
Query 500 AGCGGCAGCGAATAG 514
| |||| ||||||||
Sbjct 623 AACGGCGGCGAATAG 637
> AT1G47705.1 | Symbols: | pseudogene, similar to peroxidase 6,
similar to peroxidase GB:P00434 GI:464365 from (Brassica rapa);
blastp match of 60% identity and 7.0e-14 P-value to GP|5002334|gb|AAD37423.1|AF149281_1|AF149281
peroxidase 6 {Phaseolus
vulgaris} | chr1:17549377-17550724 REVERSE LENGTH=1348
Length=1348
Score = 76.8 bits (41), Expect = 4e-13
Identities = 68/80 (85%), Gaps = 6/80 (8%)
Strand=Plus/Plus
Query 441 CTTGGAGGGCCGAATTGGA-ATGTGAAAGTAGGAAGAAGAGATGCAAGAACGGCG-AGTC 498
|||||||| | ||||| | ||||||||||||||||||||||||||||||||| | ||||
Sbjct 511 CTTGGAGGACTGAATT-AATATGTGAAAGTAGGAAGAAGAGATGCAAGAACGGGGGAGTC 569
Query 499 AAGCGGC-AGCGAATA-GTA 516
|| || | | |||||| |||
Sbjct 570 AAACGACGA-CGAATATGTA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5