BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939966
Length=692
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05380.1 | Symbols: PRA1.B3 | prenylated RAB acceptor 1.B3 |... 1068 0.0
> AT5G05380.1 | Symbols: PRA1.B3 | prenylated RAB acceptor 1.B3
| chr5:1592130-1593026 FORWARD LENGTH=897
Length=897
Score = 1068 bits (578), Expect = 0.0
Identities = 640/670 (96%), Gaps = 3/670 (0%)
Strand=Plus/Plus
Query 1 CCCACGCGCAGTC--GTGTG-TGATGGCTAAACCTCCAACGTTACCGATCTCAGACCATT 57
||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 65 CCCACGCGCAGTCGTGTGTGATGATGGCTAATCCTCCAACGTTACCGATCTCAGACCATT 124
Query 58 CCGGTGGTGGTTCTCAATCTCAGCAAACCGTATCCGCACCGGCGTTTCGCACGTTCCTCT 117
||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 125 CCGGTGGTGGTTCCCAATCTCAGCAACCCGTATCAACACCGGCGTTTCGCACGTTCCTCT 184
Query 118 CTCGCCTCTCATCGTCGATCCGTCAAAGCCTATCGCAGCGGCGTCCATGGTTAGAACTCG 177
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 185 CTCGCCTCTCGTCGTCAATCCGCCAAAGCCTATCGCAGCGGCGTCCATGGTTAGAACTCG 244
Query 178 TAGATCGGAGCGCAATTTCACGGCCAGAATCTCTCACCGATGCGTATTCTCGGATCCGGA 237
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 245 TAGATCGAAGCGCAATTTCACGTCCAGAGTCTCTCACCGATGCGTATTCTCGGATCCGGA 304
Query 238 GGAATCTCCCTTACTTCAAGGTAAACTACGTGACGATCGTCTCATTGGTGCTCGCGCTCT 297
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 305 GGAATCTCCCTTACTTCAAGGTAAACTACGTGACGATCGTCTCCTTGGTGCTCGCGCTCT 364
Query 298 CGCTTCTCTCCCATCCATTCTCTCTTCTCGTTCTCCTATGCCTCTTCGGCGCTTGGATCT 357
|||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 365 CGCTCCTCTCCCATCCTTTCTCTCTTCTCGTTCTCCTATGCCTCTTCTGCGCTTGGATCT 424
Query 358 TCCTCTACCTTTTCCGTCCGTCAGATCAACCTCTGGTCATTCTCGGCCGTACGTTTTCAG 417
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 425 TCCTCTACCTTTTCCGTCCGTCAGATCAACCTCTGGTCGTCCTCGGCCGTACGTTTTCAG 484
Query 418 ATCGTGAGACGCTTGGAGTTTTGGTAATTTTGACAATCGTCGTCGTCTTCTTGACCAACG 477
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||
Sbjct 485 ATCGTGAGACGCTTGGTGTTTTGGTAATTTTGACAATCGTCGTCGTCTTTTTAACCAGCG 544
Query 478 TTGGATCTTTATTGACCTCTGCTTTGATGATTGGTTTCGGAATCGTATGCTTACACGGCG 537
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TTGGGTCTTTATTGACCTCTGCTTTGATGATTGGTTTCGGAATCGTATGCTTACACGGCG 604
Query 538 CATTTAGAGTTCCGGAGGATCTTTTCTTGGATGATCAAGAACCTGCTAACACCGGATTAT 597
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 605 CGTTTAGAGTCCCGGAGGATCTTTTCTTGGATGATCAAGAACCTGCTAACACCGGCTTAT 664
Query 598 TGTCTTTCCTTAGCGGAGCCGCCACCTCCGCCGCAGTTGCCGCCGCATCAACTCCTGCGT 657
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 665 TGTCTTTCCTTAGCGGAGCCGCCACTTCCGCCGCAGTTGCCGCCGCATCAACTCCTGCGT 724
Query 658 CAGGCCGTGT 667
|||| |||||
Sbjct 725 CAGGTCGTGT 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33506176049
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5