BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939971 Length=1822 Score E Sequences producing significant alignments: (Bits) Value AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosp... 3049 0.0 AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 957 0.0 AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 451 1e-125 > AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:1612006-1615356 FORWARD LENGTH=2014 Length=2014 Score = 3049 bits (1651), Expect = 0.0 Identities = 1768/1825 (97%), Gaps = 5/1825 (0%) Strand=Plus/Plus Query 1 GAGAGGCAGCGGCGGCCGTCATGGATTCATCGGCGAACATAAACAAAGCTTTAACGGAGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 52 GAGAGGCAGCGGCGGCCGTCATGGATTCATCGGCGAACATAAACAAAGCTCTAACGGAGA 111 Query 61 CGCGTTTCTCCGACCTCGAACCTCCACTCTCCGGAGATATCATTGAGGCGCTTAATCAGT 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 112 CGCGTTTCTCCGACCTCGAACCTCCACTCTCCGGAGATATCATTGAGGCTCTTAATCAGT 171 Query 121 CTGATTTCGAGTTCTGCACTCCGGTTCAAGCCGCGACGATTCCTTTACTCTGTAGTTACA 180 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 172 CTGATTTCGAGTTCTGCACTCCGGTTCAAGCCGCGACGATCCCTTTACTCTGTAGTTACA 231 Query 181 AGGATGTTGCCGTCGACGCTGCCACCGGTTCTGGAAAAACCCTAGCTTTCGTCG-TCCCT 239 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 232 AGGATGTTGCCGTCGACGCTGCCACTGGTTCTGGAAAAACCCTAGCTTTCGTCGTTCCC- 290 Query 240 CTCGTTGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCATCAGGTCATGGGG 299 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 291 CTCGTAGAAATCCTCCGTCGATCCACCTCATTCCCTCCGAAGCCTCACCAGGTCATGGGG 350 Query 300 GTGATTATATCGCCAACAAGAGAGCTATCGACGCAGATATATAATGTGGCACAACCATTT 359 ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| Sbjct 351 GTGATTATATCGCCAACGAGAGAGCTATCAACGCAGATATATAATGTCGCACAACCATTT 410 Query 360 GTTTCGACTTTGGCAAATGTGAACTCTGTGTTACTTGTTGGAGGCCGAGAGGTGAAAGCT 419 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 411 GTTTCGACTTTGGCAAATGTGAACTCTGTGTTGCTTGTTGGAGGCCGAGAGGTGAAAGCT 470 Query 420 GACACGAAGATTATTGAAGAAGAAGGATGCAATCTCTTGATTGGTACACCTGGAAGGCTT 479 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 471 GACATGAAGATTATTGAAGAAGAAGGATGCAATGTCTTGATTGGTACACCTGGAAGACTT 530 Query 480 TCAGATATAATGGAACGAATGGAGATTCTCGATTTTCGAAATCTTGAGATTCTTA-TCTT 538 || ||||| |||||||||||||||||||| ||||||||||||||||||||||||| || | Sbjct 531 TCTGATATTATGGAACGAATGGAGATTCTGGATTTTCGAAATCTTGAGATTCTTATTC-T 589 Query 539 AGACGAGGCTGATAGGCTTTTGGAGATGGGGTTCCAAAGGCAGGTGAATTACATTATCTC 598 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 AGATGAGGCAGATAGGCTTTTGGAGATGGGGTTCCAAAGGCAGGTGAATTACATTATCTC 649 Query 599 ACGCTTGCCAAAGCAGAGGAGGACTGGTCTCTTTTCAGCTACACAAACAGAGGGCGTTGA 658 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 650 ACGCTTGCCAAAGCAGAGGAGGACTGGCCTCTTTTCAGCTACACAAACAGAGGGCGTTGA 709 Query 659 AGAGCTCGCCAAGGCTGGACTTAGGAACCCTGTGAGAGTTGAAGTTCGAGCTGAGGCGAA 718 |||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| Sbjct 710 AGAGCTCGCCAAGGCTGGGCTTAGGAACCCTGTGAGAGTTGAAGTTCGAGCTAAGTCGAA 769 Query 719 GTCGGAATCTTCCCAGCAATTTACAAACTCGAAAACCCCTTCTGGTCTTCATCTTGAGTA 778 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 770 GTCGGAATCATCCCAGCAATTGACAAACTCGAAAACCCCTTCTGGTCTTCATCTTGAGTA 829 Query 779 TATCGAATGCGAAGCAGATAAGAAATCATCACAACTAGTGGATCTCCTCATCAAGAACAG 838 ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 830 TATGGAATGCGAAGCAGATAAAAAATCATCACAACTAGTTGATCTCCTCATCAAGAACAG 889 Query 839 TGATAAAAAGCTTATAGTATTCTTCATGACCTGTGCTTCTGTTGACTACTGGGGACTCGT 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 890 TGATAAAAAGCTTATAGTATTCTTCATGACCTGTGCTTCTGTTGACTACTGGGGACTCGT 949 Query 899 ACTTTCAAAAATTCCTGCCCTGAAGTCTATATCTTTAATTCCTATCCATGGGGATATGAA 958 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 950 ACTTTCAAAAATTCCTGCCCTGAAGTCCATATCTTTAATTCCTATCCATGGGGATATGAA 1009 Query 959 GCAGAATGCAAGAGACAAGGCATTAGCTTCGTTTACTAAAGCATCAAGCGGTGCCCTTCT 1018 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1010 GCAGAATGCAAGAGACAAGGCATTAGCTTCGTTTACTAAAGCATCAAGTGGTGCCCTTCT 1069 Query 1019 GTGCACAGACGTTGCTGCACGTGGACTTGATATTCCAGGCATTGATTATGTAGTTCAGTA 1078 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1070 GTGCACAGACGTTGCTGCACGTGGACTTGATATTCCAGGCATTGATTATGTTGTTCAGTA 1129 Query 1079 TGATCCCCCACAAGACCCAAATATGTTCAACCACAGGGCCGGCAGAACTGCAAGATTGGG 1138 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1130 TGATCCCCCACAAGACCCAAATATGTTCAACCACAGGGCCGGCAGAACTGCAAGATTAGG 1189 Query 1139 AAGACTAGGGAAGGCCATTGTGTTTTTACTGCCTAAGGAGGAAGCCTATGTAGAGTTTAT 1198 ||||| ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1190 AAGACAAGGGAGGGCCATTGTGTTTTTACTGCCCAAGGAAGAAGCCTATGTAGAGTTTAT 1249 Query 1199 GCGCATAAGAAGAGTCCCTCTGGAAGAGAGAAAATGCTCTGAGGACGCATCCGATGTCAT 1258 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1250 GCGCATAAGAAGAGTCCCTTTGGAAGAGAGAAAATGCTCTGAGGACGCATCCGATGTCAT 1309 Query 1259 CCCGATCATACGTTCAGCTGCCATGAAGGACCGAGCAGTGTTGGAGAAGGGATTAAAGGC 1318 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1310 CCCGATTATACGTTCAGCTGCCATGAAGGACCGAGCAGTGATGGAGAAGGGATTAAAGGC 1369 Query 1319 ATTTGTTTCTTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGATGGAA 1378 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 ATTTGTTTCCTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGATGGAA 1429 Query 1379 AGAACTTGAAATTGGAGAGTTAGCCATGGGATATGGCCTCTTGTATCTTCCTTCAATGTC 1438 ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1430 AGACCTTGAGATTGGAAAGTTAGCCATGGGATATGGCCTCTTGTATCTTCCTTCAATGTC 1489 Query 1439 TGAAGTTAAACAACACAGACTTTCCAGTGAGGGTTTCACACCTGTTGAAGGTGTCAAGTT 1498 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1490 TGAAGTTAAACAACACAGACTTTCCAGTGAGGGTTTCACACCAGTTGAAGGTGTCAAGTT 1549 Query 1499 TGACGAAATAAAATTCAAGGACAAATCTCGGgagaaacaaagacagcaaaacttacaagt 1558 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1550 TGAAGAAATAAAATTCAAGGACAAATATCGGGAGAAACAAAGACAGCAAAACTTACAAGT 1609 Query 1559 aaggaaagagaaacggcaagaagagaaaagagagaaaggcaagagaaaaagGGTTGATGC 1618 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1610 AAGGAAAGAGAAACGGCAAGAAGAGAAAAAAGAGAAAGGCAAGAGAAAAAGGGTTGATGC 1669 Query 1619 TCCTACTACTAATGATCCTAAGAAAGCGTCGAGAAAGTTAACAGGGAAGCAAAGACAAAC 1678 | || ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1670 TTCTGCTAGTAATGATCCTAAGAAAGCGTCGAGAAAGTTAACGGGGAAACAAAGACAAAC 1729 Query 1679 TATTCAAACTGCTGAAGATGAAGAAGTGATGGATCGAGATTATAAGTTAATGATAAAAGT 1738 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1730 TATTCAAACTGCTGAAGATGAAGAAGTGATGGATCGAGATTATAAGTTGATGATAAAAGT 1789 Query 1739 AAAGAAAGGGTTAATTAAAGAAGATGAATATGAAAGACTTACAGGAGATGATGATTTATT 1798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1790 AAAGAAAGGGTTAATTAAAGAAGATGAATATGAAAGACTTACAGGAGATGATGATTTATT 1849 Query 1799 CTGATGAGAAGAAACAAA-CCTGCA 1822 |||||||||||||||||| |||||| Sbjct 1850 CTGATGAGAAGAAACAAAACCTGCA 1874 > AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:26897005-26899434 REVERSE LENGTH=1960 Length=1960 Score = 957 bits (518), Expect = 0.0 Identities = 912/1097 (83%), Gaps = 47/1097 (4%) Strand=Plus/Plus Query 742 CAAACTCGAAAACCCCTTCTGGTCT-TCATCT-TGAGTATATCGAATGCGAAGCAGAT-A 798 |||| |||||||| |||||||||| | || | ||||||| | |||||||||||||| | Sbjct 748 CAAAGTCGAAAACGTCTTCTGGTCTGT-AT-TGTGAGTATTTAAAATGCGAAGCAGATCA 805 Query 799 AGAAATCATCACAACTAGTGGATCTCCTCATCAAGAACAGTGATAAAAAGCTTATAGTAT 858 | || ||||||||||||||| ||||||| ||| |||||| ||||||||||| | |||| Sbjct 806 A-AAGTCATCACAACTAGTGCATCTCCTGATCGAGAACAAAAATAAAAAGCTTGTCGTAT 864 Query 859 TCTTCATGACCTGTGCTTCTGTTGACTACTGGGGACTCGTACTTTCAAAAATTCCTGCCC 918 |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 865 TCTTCATGACATGTGCTTGTGTTGATTACTGGGGACTCGTACTTTCAAAAATTCCTACCC 924 Query 919 TGAAGTCTATAT-CTT-TAATTCCTATCCATGGGGATATGAAGCAGAATGCAAGAGACAA 976 | ||||| || | ||| | |||| | ||||||| | ||| | ||||| | ||||||| Sbjct 925 TCAAGTCCATTTCCTTCT-TTTCC-ACCCATGGGAAGATGGATCAGAAAGGTAGAGACAC 982 Query 977 GGCATTAGCTTCGTTTACTA-AAGCATCAAGCGGTGCCCTTCTGTGCACAGACGTTGCTG 1035 |||||||||||||||||| | | ||||||||||||| |||||| |||||||| || |||| Sbjct 983 GGCATTAGCTTCGTTTAC-AGAGGCATCAAGCGGTGTCCTTCTATGCACAGATGTCGCTG 1041 Query 1036 CACGTGGACTTGATATTCCAGGCATTGATTATGTAGTTCAGTATGATCCCCCACAAGACC 1095 ||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||| Sbjct 1042 CACGTGGACTTGACATTCCAGGCATCGATTACGTTGTTCAGTATGATCCCCCACAAGACC 1101 Query 1096 CAAATATGTTCAACCACAGGGCCGGCAGAACTGCAAGATTGGGAAGACTAGGGAAGGCCA 1155 || || | || | ||| |||| ||||| ||||||||| ||| ||||| ||| | ||||| Sbjct 1102 CAGATGTATTTATCCATAGGGTTGGCAGGACTGCAAGAATGGAAAGACAAGGTAGGGCCA 1161 Query 1156 TTGTGTTTTTACTGCCTAAGGAGGA-AGCCTATGTAGAGTTTATGCGCATAAGAAGAGTC 1214 ||||||||||| |||| ||||| || || |||||||||||| |||||||| |||| ||| Sbjct 1162 TTGTGTTTTTAATGCCCAAGGA-GACAGACTATGTAGAGTTCATGCGCATTCGAAGGGTC 1220 Query 1215 CCTCTGGAAGAGAGAAAATGCTCTGAGGACGCATCCGATGTCATCCCGATCATACGTTCA 1274 ||||| | |||||||||||||||||| |||| || |||||||||||||| ||||||||| Sbjct 1221 CCTCTTCAGGAGAGAAAATGCTCTGAGAACGCTTCTGATGTCATCCCGATTATACGTTCA 1280 Query 1275 GCT-GCCATGAAGGACCGAGCAGTGTTGGAGAAGGGATTAAAGGCATTTGTTTCTTTTGT 1333 || ||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1281 -CTAGCCATCAAGGACCGGGCAGTGTTGGAGAAGGGATTACAGGCATTTGTTTCCTTTGT 1339 Query 1334 CCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGATGGAAAGAACTTGAAATTGG 1393 ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| || Sbjct 1340 CCGTGCTTATAAGGAGCATCACTGCTCTTACATTTTCAGTTGGAAAGGACTTGAAATCGG 1399 Query 1394 AGAGTTAGCCATGGGATATGGCCTCTTGTATCTTCCTTCA-ATGTCTGAAGTTAAACAAC 1452 | |||||||||||||||||||| |||||| | |||||| | || ||||||||||||||| Sbjct 1400 AAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTT-ACATATCTGAAGTTAAACAAG 1458 Query 1453 ACAGACTTTCCAGTGAGGGTTTCACACCTGTTGAAGGTGTCAAGTTTGACGAAATAAAAT 1512 ||||| || || || ||||| |||||||| |||| ||| |||||| || ||||||| Sbjct 1459 ACAGAATTGGCATTGTCGGTTTTACACCTGTCCAAGGCATCACGTTTGAGGACATAAAAT 1518 Query 1513 TCAAGGACAAATCTCGGgagaaacaaagacagcaaaacttacaagtaaggaaagagaaac 1572 |||| |||||||||||||||||||||||||||||||||||| || ||||||||| |||| Sbjct 1519 ACAAGAACAAATCTCGGGAGAAACAAAGACAGCAAAACTTACTAGCAAGGAAAGACAAAC 1578 Query 1573 ggcaagaagagaaa-agagagaaaggcaagagaaaaagGGTTGAT-GCTCCTACTACTAA 1630 |||| |||| ||| |||| |||| |||||| ||| | | | | | | | | Sbjct 1579 TGCAACAAGA-AAAGAGAGGGAAACGCAAGA-AAA--GC-TCCAAAGAGGCGG-T--TGA 1630 Query 1631 TGATCCTAAGAAAGCGTCGAGAAAG------TTAACAGGGAAGCAAAGACAAACTATTCA 1684 |||| |||| ||||||||||||||| ||||| |||| ||||||||||||||| || Sbjct 1631 TGATTCTAACAAAGCGTCGAGAAAGAGAAAGTTAACGGGGAGGCAAAGACAAACTATCCA 1690 Query 1685 AACTGCTG-AAGATGAAGAAGTGATGGATC-GAGATTATAAG-TTAATG-ATAAAAGTAA 1740 ||| || | |||||||||||| ||| || ||||||||| | ||| || | |||| | | Sbjct 1691 AACAGC-GCAAGATGAAGAAGAAATGAATTTGAGATTATA-GCTTACTGGA-AAAACTGA 1747 Query 1741 AGAAAGGGTTAATTAAAGAAGATGAATATGA-AAGACTTACAGGAGATGATGATTTAT-T 1798 ||||||| | ||||| ||||||||| | || || ||||||||||| | ||||||| | | Sbjct 1748 AGAAAGGCTCAATTATAGAAGATGATTTTGCTAA-ACTTACAGGAGCTCATGATTT-TGT 1805 Query 1799 CTGATGAGAAGAAACAA 1815 ||||| | ||||| ||| Sbjct 1806 CTGAT-A-AAGAAGCAA 1820 > AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:26870141-26872152 REVERSE LENGTH=1519 Length=1519 Score = 451 bits (244), Expect = 1e-125 Identities = 464/566 (82%), Gaps = 31/566 (5%) Strand=Plus/Plus Query 1265 CATACGTTCAGCT-GCCATGAAGGACCGAGCAGTGTTGGAGAAGGGATTAAAGGCATTTG 1323 |||||||||| || ||||| |||||||| | ||||||||||||||||||||||||||||| Sbjct 939 CATACGTTCA-CTAGCCATCAAGGACCGGGAAGTGTTGGAGAAGGGATTAAAGGCATTTG 997 Query 1324 TTTCTTTTGTCCGTGCTTATAAGGAGCATCACTGCTCTTTCATTTTCAGATGGAAAGAAC 1383 |||| |||||||||||||||||||||||||| ||||||| ||||||||| ||||||| || Sbjct 998 TTTCCTTTGTCCGTGCTTATAAGGAGCATCAATGCTCTTACATTTTCAGTTGGAAAGGAC 1057 Query 1384 TTGAAATTGGAGAGTTAGCCATGGGATATGGCCTCTTGTATCTTCCTT-CAATGTCTGAA 1442 ||||||| ||| |||||||||||||||||||| |||||| | |||||| || | |||||| Sbjct 1058 TTGAAATCGGAAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTTACA-TATCTGAA 1116 Query 1443 GTTAAACAACACAGACTTTCCAGTGAGGGTTTCACACCTGTTGAAGGTGTCAAGTTTGAC 1502 ||||||||| ||||| || || || ||||| |||||||| |||| ||| |||||| Sbjct 1117 GTTAAACAAGACAGAATTGGCATTGTCGGTTTTACACCTGTCCAAGGCATCACGTTTGAG 1176 Query 1503 GAAATAAAATTCAAGGACAAATCTCGGgagaaacaaagacagcaaaacttacaagtaagg 1562 || |||||||||||| |||||||||||||||||||||| |||||||||||| || |||| Sbjct 1177 GACATAAAATTCAAGAACAAATCTCGGGAGAAACAAAGGCAGCAAAACTTATTAGCAAGG 1236 Query 1563 aaagagaaacggcaagaagagaaa-agagagaaaggcaagagaaaaagGGTTGAT-GCTC 1620 ||||| |||| |||| |||| ||| |||| |||| |||||| ||| | | | | Sbjct 1237 AAAGACAAACTGCAACAAGA-AAAGAGAGGGAAACGCAAGA-AAA--GC-TCCAAAGAGG 1291 Query 1621 CTACTACTAATGATCCTAAGAAAGCGTCGAGAAAG------TTAACAGGGAAGCAAAGAC 1674 | | | ||||| |||| ||||||||||||||| ||||| |||| |||||||| Sbjct 1292 CGG-T--TGATGATTCTAACAAAGCGTCGAGAAAGAGAAAGTTAACGGGGAGGCAAAGAC 1348 Query 1675 AAACTATTCAAACTGCTGAAGATGAAGAAGTGATGGATC-GAGATTATAAG-TTAATGAT 1732 ||||||| ||||| ||| |||||||||||| ||| || ||||||||| | ||| ||| Sbjct 1349 AAACTATCCAAACAGCTCAAGATGAAGAAGAAATGAATTTGAGATTATA-GCTTACTGAA 1407 Query 1733 AAAAGTAAAGAAAGGGTT-AATTAAAGAAGATGAATATGA-AAGACTTACAGGAGATGAT 1790 |||| | |||||||| || ||||| ||||||||| | || || ||||||||||| | || Sbjct 1408 AAAACTGAAGAAAGG-TTCAATTACAGAAGATGATTTTGCTAA-ACTTACAGGAGCTCAT 1465 Query 1791 GATTTAT-TCTGATGAGAAGAAACAA 1815 ||||| | |||||| | ||||| ||| Sbjct 1466 GATTT-TGTCTGAT-A-AAGAAGCAA 1488 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90160178820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5