BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939973
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05470.1 | Symbols: EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | eukaryo... 1803 0.0
AT2G40290.1 | Symbols: | Eukaryotic translation initiation fac... 695 0.0
AT5G05480.1 | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminy... 139 5e-32
> AT5G05470.1 | Symbols: EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | eukaryotic
translation initiation factor 2 alpha subunit | chr5:1620458-1622340
FORWARD LENGTH=1282
Length=1282
Score = 1803 bits (976), Expect = 0.0
Identities = 1053/1091 (97%), Gaps = 2/1091 (0%)
Strand=Plus/Plus
Query 1 TTCTCAAGAATCTCATAACCATGGCGAATCCCGCACCGAATCTGGAATGTCGTATGTACG 60
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 102 TTCTCAAGAATCTCATAACCATGGCGAATCCTGCTCCGAATCTAGAATGTCGTATGTACG 161
Query 61 AATCCAAATACCCTGATGTAGACATGGCGGTGATGATCCAGGTGAAGAACATCGCTGACA 120
|||| | |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 162 AATCGAGATACCCTGATGTAGACATGGCGGTGATGATTCAGGTGAAGACCATCGCTGACA 221
Query 121 TGGGAGCTTACGTCTCTCTACTTGAGTACAACGACATTGAAGGAATGATCCTATTCTCTG 180
||||||||||||| ||||| ||||| |||||| |||| |||||||||||||| ||||| |
Sbjct 222 TGGGAGCTTACGTATCTCTCCTTGAATACAACAACATCGAAGGAATGATCCTGTTCTCCG 281
Query 181 AGCTCTCTCGCCGTCGGATTCGTAGTATCAGTAGCTTAATCAAGGTCGGTCGGATCGAGC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 282 AGCTCTCTCGCCGTCGGATTCGTAGTATCAGTAGCTTAATCAAGGTCGGTCGTACCGAGC 341
Query 241 CTGTAATGGTCCTTCGTGTCGATAGAGAGAGAGGTTACATTGATCTTAGTAAGCGTAGGG 300
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 342 CTGTTATGGTCCTTCGTGTCGATAGAGAGAGAGGTTACATTGATCTCAGTAAACGTAGGG 401
Query 301 TTAGTGATGAGGACAAAGGGGCTTGTGAGGAGAGGTTTAATAAGAGCAAGCTTGTTCACT 360
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 402 TTAGTGATGAGGACAAAGAGGCTTGTGAGGAGAGGTATAATAAGAGCAAGCTTGTTCACT 461
Query 361 CTATCATGCGTCATGTTGCTGAGACTGTTGGTGTCGATTTGGAGGAGCTATACGTAAACA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CTATCATGCGTCATGTTGCTGAGACTGTTGGTGTCGATTTGGAGGAGCTATACGTAAACA 521
Query 421 TCGGCTGGCCATTGTATAAGAAGCATGGACATGCTTTTGAGGCTTTCAAAATTGTTGTCA 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TCGGTTGGCCATTGTATAAGAAGCATGGACATGCTTTTGAGGCTTTCAAAATTGTTGTCA 581
Query 481 CTGATCCTGATTCGGTTTTCAATGCTCTTACCCGAGAAGTTAAAGAAACAGGACCTGATG 540
||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 582 CTGATCCTGATTCAGTTTTCGATGCTCTTACCCGAGAAGTTAAAGAAACTGGACCTGATG 641
Query 541 GTGTGGAGGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GTGTGGAGGTGACCAAAGTTGTCCCGGCTGTGTCTGAAGAATTGAAAGATGCATTTTTGA 701
Query 601 AGAACATTAGGAGGAGAATGACACCACAGCCAATGAAGATTCGTGCTGATATTGAATTGA 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 AGGACATTAGGAGGAGAATGACACCACAGCCAATGAAGATTCGTGCTGATATTGAATTGA 761
Query 661 AGTGTTTTCAGTTTGATGGAGTTCTCCACATCAAGGAAGCCATGAAGAAGGCAGAGGCTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 AGTGTTTTCAGTTTGATGGAGTTCTCCACATCAAGGAAGCCATGAAGAAGGCAGAGGCTG 821
Query 721 AAGGTAGTGATGATTGTCCAGTCAAAATCAAGCTTGTTGCTCCACCACTTTATGTACTCA 780
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 822 TAGGTACTGATGATTGTCCAGTCAAAATCAAGCTCGTTGCTCCACCACTTTATGTACTCA 881
Query 781 CAACTCACACCC-TTGACAAGGAAAAAGGAATAGTGACTCTGAATAAAGCAATTGAAGCA 839
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CAACTCACACCCATT-ACAAGGAAAAAGGAATAGTGACTCTGAATAAAGCAATTGAAGCA 940
Query 840 TGCATTACTGCAATAGAGGAACAAAAGGGTAAACTTGTTGTTAAAGAAGGTGCTCGTGCG 899
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 941 TGCATTACTGCAATTGAGGAACACAAGGGTAAACTTGTCGTTAAAGAAGGTGCTCGTGCG 1000
Query 900 GTGAGTGAGCGTGATGACAAATTGCTTGCTGAGCACATGGCTAAGCTTAGAATGGATAAT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 GTGAGTGAGCGTGATGACAAATTGCTTGCTGAGCACATGGCTAAGCTTAGAATGGATAAT 1060
Query 960 GAAGAAATCAGTGGTGATGAGGGGAGTGAAGATGAAGAAGAAGACACTGGAATGGGAGAA 1019
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1061 GAAGAAATGAGTGGTGATGAGGGAAGCGAAGATGAAGAAGAAGACACTGGAATGGGAGAA 1120
Query 1020 GTCGATATCGATGGAGGTAGCGGGATAATTGAATGAACAAAAGCAAAAGAATTGTAACTG 1079
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1121 GTCGATATCGATGGAGGTAGCGGGATAATTGAATGAACAAAAGCAAAAGCATTGTAACTG 1180
Query 1080 CTGTTTCTGCT 1090
|||||||||||
Sbjct 1181 CTGTTTCTGCT 1191
> AT2G40290.1 | Symbols: | Eukaryotic translation initiation factor
2 subunit 1 | chr2:16828766-16831054 REVERSE LENGTH=1464
Length=1464
Score = 695 bits (376), Expect = 0.0
Identities = 822/1038 (79%), Gaps = 27/1038 (3%)
Strand=Plus/Plus
Query 20 CATGGCGAATCCCGCACCGAATCTGGAATGTCGTATGTACGAATCCAAATACCCTGATGT 79
|||||||| || |||||||||| || ||||| |||||||| | |||||||| || ||
Sbjct 165 CATGGCGAGTCAAACACCGAATCTCGAGTGTCGGATGTACGAGGCGAAATACCCAGAGGT 224
Query 80 AGACATGGCGGTGATGATCCAGGTGAAGAACATCGCTGACATGGGAGCTTACGTCTCTCT 139
|| ||||||||||||||||||||||||||||| || || ||||||||||| || |||||
Sbjct 225 GGATATGGCGGTGATGATCCAGGTGAAGAACATTGCCGATATGGGAGCTTATGTTTCTCT 284
Query 140 ACTTGAGTACAACGACATTGAAGGAATGATCCTATTCTCTGAGCTCTCTCGCCGTCGGAT 199
|| ||||||||| |||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 285 CCTCGAGTACAACAACATCGAAGGCATGATCCTTTTCTCCGAGCTCTCTCGTCGTCGGAT 344
Query 200 TCGTAGTATCAGTAGCTTAATCAAGGTCGGTCGGATCGAGCCTGTAATGGTCCTTCGTGT 259
|| ||| | || || || || |||||||| | || |||||||| ||||| || |||||
Sbjct 345 CCGAAGTGTTAGCAGTTTGATTAAGGTCGGAAGAATTGAGCCTGTCATGGTTCTCCGTGT 404
Query 260 CGATAGAGAGAGAGGTTACATTGATCTTAGTAAGCGTAGGGTTAGTGATGAGGACAAAGG 319
|| | ||||| ||||||||||||||| || || ||||| || || || || || |
Sbjct 405 TGACAAAGAGAAAGGTTACATTGATCTGAGCAAACGTAGAGTCAGCGAGGAAGATATTCA 464
Query 320 GGCTTGTGAGGAGAGGTTTAATAAGAGCAAGCTTGTTCACTCTATCATGCGTCATGTTGC 379
| ||||||| ||||||| ||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct 465 GACTTGTGAAGAGAGGTATAACAAGAGCAAACTTGTTCATTCTATCATGCGCCATGTTGC 524
Query 380 TGAGACTGTTGGTGTCGATTTGGAGGAGC-TATACGTAAACATCGGCTGGCCATTGTATA 438
||||||| || | ||||||||||| | | || || ||||| || ||||| ||||||
Sbjct 525 TGAGACTCTTTCAATTGATTTGGAGGA-CTTGTATGTGAACATTGGTTGGCCTTTGTAT- 582
Query 439 AGAAG-CATGGACATGCTTTTGAGGCTTTCAAAATTGTT-GTCACTGATCCTGATTCGGT 496
|| | ||||| |||||||||||||||||||| | | || || || ||||||||||| ||
Sbjct 583 CGACGACATGGTCATGCTTTTGAGGCTTTCAAGA-TCTTAGTGACGGATCCTGATTCAGT 641
Query 497 TTTCAATGCTCTTACCCGAGAAG-TTAAAGAAACAGGACCTGATGGTG-TGGAGGTGACC 554
|| | |||| ||||| | || | |||||| || |||||||| | ||||||||
Sbjct 642 GTTGGGTCCTCTCACCCGTG-AGATCAAAGAAGTTGGGCCTGATGG-GCAAGAGGTGACT 699
Query 555 AAAGTTGTCCCGGCTGTGT-CTGAAGAATTGAAAGATGCATTTTTGAAGAACATTAGGAG 613
|| ||||| || ||||| | | |||||| ||||||||||| || ||||||||||||||||
Sbjct 700 AAGGTTGTACCTGCTGT-TACGGAAGAAGTGAAAGATGCACTTGTGAAGAACATTAGGAG 758
Query 614 GAGAATGACACCACAGCCAATGAAGATTCGTGCTGATATTGAATTGAAGTGTTTTCAGTT 673
||||||||||||||| |||||||| || || |||||||| ||||||||||||||||||||
Sbjct 759 GAGAATGACACCACAACCAATGAAAATCCGGGCTGATATCGAATTGAAGTGTTTTCAGTT 818
Query 674 TGATGGAGTTCTCCACATCAAGGAAGCCATGAAGAAGGCAGAGGCTGAAGGTAGTGATGA 733
|||||||||| | ||||| ||||| || ||||| || || || || | || | ||| ||
Sbjct 819 TGATGGAGTTGTTCACATTAAGGAGGCTATGAAAAATGCTGAAGCCGCTGGAAATGAAGA 878
Query 734 TTGTCCAGTCAAAATCAAGCTTG-TTGCTCCACCACTTTATGTACTCACAACTCACACCC 792
||||| || || || || ||| |||||||||| || ||||| || || ||||| || |
Sbjct 879 CTGTCCTGTTAAGATTAAA-TTGGTTGCTCCACCTCTGTATGTCCTTACTACTCAGACAC 937
Query 793 TTGACAAGGAAAAAGGAATAGTGACTCTGAATAAAGCAATTGAAGCATGCATT-ACTGCA 851
||||||||||| |||| || | | ||| || ||||| || | |||||||| | | ||
Sbjct 938 TTGACAAGGAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGAGA-CA 996
Query 852 ATAGAGGA-ACA-AAAGGGTAAACTTGTTGTTAAAGAAGGTGCTCGTGCGGTGAGTGAGC 909
|| ||| | ||| ||||| || ||||| ||||| || || ||| | || |||||||| |
Sbjct 997 ATTGAG-ACACACAAAGGC-AAGCTTGTCGTTAAGGAGGGGGCTAGAGCTGTGAGTGAAC 1054
Query 910 GTGATGACAA-ATTGCTTG-CTGAGCACATGGCTAAGCTTA-GAATGGATAATGAAGAAA 966
||||||| || || ||| | | || |||||||||||||| | | | || ||||||||||
Sbjct 1055 GTGATGAAAAGAT-GCT-GACAGAACACATGGCTAAGCT-ACGTCTTGACAATGAAGAAA 1111
Query 967 TCAGTGGTGATGAGGGGAGTGAAGATGAAGAAGAAGACACTGGAATGGGAGAAGTCGATA 1026
| || || ||||| | || | ||| |||||||| |||||||| ||||| ||||| |||
Sbjct 1112 TGAGCGGCGATGAAGATAGCGGAGACGAAGAAGAGGACACTGGTATGGGCGAAGTGGATC 1171
Query 1027 TCGATGGAGGTAGCGGGA 1044
|||||| |||| || |||
Sbjct 1172 TCGATGCAGGT-GCCGGA 1188
> AT5G05480.1 | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase A protein | chr5:1622172-1624270 REVERSE
LENGTH=2099
Length=2099
Score = 139 bits (75), Expect = 5e-32
Identities = 77/78 (99%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 1013 GGGAGAAGTCGATATCGATGGAGGTAGCGGGATAATTGAATGAACAAAAGCAAAAGAATT 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2099 GGGAGAAGTCGATATCGATGGAGGTAGCGGGATAATTGAATGAACAAAAGCAAAAGCATT 2040
Query 1073 GTAACTGCTGTTTCTGCT 1090
||||||||||||||||||
Sbjct 2039 GTAACTGCTGTTTCTGCT 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5