BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939991
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05630.1 | Symbols: | Amino acid permease family protein | ... 2255 0.0
> AT5G05630.1 | Symbols: | Amino acid permease family protein
| chr5:1682321-1684191 FORWARD LENGTH=1871
Length=1871
Score = 2255 bits (1221), Expect = 0.0
Identities = 1426/1523 (94%), Gaps = 22/1523 (1%)
Strand=Plus/Plus
Query 1 ATTTTAAGTTTCAATTCTTGATGACTGAGCTTAGCTCTTCC-AATCTTGACTCCGCCACA 59
|||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||| |
Sbjct 201 ATTTTAAGTTCCAATTCTCGATGACTGAGCTTAGCTC-TCCGAATCTTGACTCCGCCTCG 259
Query 60 CAGAAGCTAAGAATCTCCACCGAAAACCCACCTCCT-CACAT--AAACAT-AG-A-T-GT 112
||||||| ||||||||||||||||||||| |||||| | | | |||| || | | ||
Sbjct 260 CAGAAGCCAAGAATCTCCACCGAAAACCCTCCTCCTCCTCCTCCTCACATAAGCATTGGT 319
Query 113 CCCCACCACCGGTGACGCTGCT-CTGTCTCCGGCGAGAACCGTCAACCAATTCAAGAAAA 171
||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 320 -GTCACCACCGGTGACCCTGCTAC-GTCTCCGGCGAGAACCGTCAACCAAATCAAGAAAA 377
Query 172 TTACTGTACTGCCACTAGTTTTCCTGATATTCTACGAGGTCTCAGGCGGTCCGTTTGGGA 231
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TAACGGTACTGCCACTAGTTTTCCTGATATTCTACGAGGTCTCAGGCGGTCCGTTTGGGA 437
Query 232 TTGAGGATAGTGTGAAAGCAGCAGGACCATTGTTAGCCATTGTTGGATTCATCGTCTTCC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TTGAGGATAGTGTGAAAGCAGCAGGACCATTGTTAGCCATTGTTGGATTCATCGTCTTCC 497
Query 292 CGTTCATATGGAGTATCCCTGAAGCACTCATCACCGCTGAGATGGGAACAATGTTCCCTG 351
| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 498 CTTTTATATGGAGTATCCCTGAAGCACTCATCACTGCTGAGATGGGAACAATGTTCCCGG 557
Query 352 AGAACGGTGGTTACGTTGTGTGGGTCTCTTCAGCCT-TGGGACCTTATTGGGGGTTTCAA 410
|||||||||||||||| ||||||||| ||| ||| | |||||||||||||||||||||||
Sbjct 558 AGAACGGTGGTTACGTCGTGTGGGTCACTTTAGC-TATGGGACCTTATTGGGGGTTTCAA 616
Query 411 CAAGGTTGGGTTAAATGGCTAAGCGGCGTTATAGACAACGCTCTTTATCCGATTCTTTTC 470
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 617 CAAGGTTGGGTTAAATGGCTAAGTGGCGTTATAGACAACGCTCTTTATCCGATTCTCTTC 676
Query 471 CTCGACTATCTCAAATCCGGAATCCCGATTCTCGGTAGTGGAATCCCTCGAGTCGCTGCA 530
|| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 677 CTTGACTATCTCAAATCAGGAATCCCGATACTCGGTAGTGGGATCCCTCGAGTCGCTGCG 736
Query 531 ATTTTGGTGTTGACTGTAGCCTTGACTTACTTGAACTACAGGGGTTTAAGCATTGTCGGT 590
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 737 ATTCTGGTGTTGACTGTAGCCTTGACTTACTTGAACTACAGGGGTTTAAGCATTGTTGGT 796
Query 591 GTAGCAGCTGTTCTTCTCGGCGTTTTCTCGATCCTTCCGTTTCTGGTGATGTCTTTCATG 650
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 797 GTAGCAGCTGTTCTTCTCGGCGTTTTCTCCATCCTTCCGTTTGTGGTGATGTCTTTCATG 856
Query 651 TCGATTCCAAAGCTTAAGCCTTCGAGATGGCTTGTGGTTAGCAAGAAGATGAAAGGTGTT 710
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TCGATTCCAAAGCTTAAACCTTCGAGATGGCTTGTGGTTAGCAAGAAGATGAAAGGTGTT 916
Query 711 GACTGGAGCTTGTATCTCAACACACTTTTCTGGAATCTCAACTATTGGGATTC-GATTAG 769
||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct 917 AACTGGAGCTTGTATCTCAATACACTCTTCTGGAATCTCAACTATTGGGATTCAG-TTAG 975
Query 770 TACGCTTTCGGGCGAAGTGGAAAACCCGAGTAAAACGTTACCAAGGGCTCTGTTTTATGC 829
||||||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 976 TACGCTTACGGGTGAAGTTGAAAACCCGAGTAAAACATTACCAAGAGCTCTGTTTTATGC 1035
Query 830 TCTGGTTCTTGTTGTGCTATCTTACATTTTTCCGGTTTTGACCGGGACAGGAGCTATAGC 889
|||| ||||||||||| | |||||||| || |||||||||||||||||||||||||||||
Sbjct 1036 TCTGCTTCTTGTTGTGTTTTCTTACATCTTCCCGGTTTTGACCGGGACAGGAGCTATAGC 1095
Query 890 TCTTGATCAGAAGCTATGGACTGACGGGTATTTCGCTGATATCGGTAAAGTTATAGGAGG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TCTTGATCAGAAGCTATGGACTGACGGGTATTTCGCTGATATCGGTAAAGTTATAGGAGG 1155
Query 950 AGCATGGTTGGGATGGTGGATTCAAGCTGCAGCTGCGACATCGAACATGGGAATGTTTTT 1009
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1156 AGTTTGGTTGGGATGGTGGATTCAAGCTGCAGCTGCGACATCTAACATGGGAATGTTTTT 1215
Query 1010 GGCTGAAATGAGCAGTGATTCTTTTCAGCTTCTTGGAATGGCTGAGCGGGGGATGCTTCC 1069
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1216 GGCTGAAATGAGCAGTGATTCTTTTCAGCTACTTGGAATGGCTGAGAGGGGGATGCTTCC 1275
Query 1070 CGAGGTCTTTGCCAAGAGATCGCGCTACGGAACTCCATGGGTGGGGATACTGTTCTCGGC 1129
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1276 CGAGGTCTTTGCCAAGAGATCGCGCTACAGAACTCCATGGGTCGGGATACTGTTCTCGGC 1335
Query 1130 CTCTGGTGTGATTCTCTTGTCATGGTTAAGCTTTCAAGAGATTGTGGCTGCAGAGAATTT 1189
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1336 CTCTGGTGTGATTATCTTGTCATGGTTAAGCTTTCAAGAGATTGTGGCTGCAGAGAATCT 1395
Query 1190 GTTATACTGTTTTGGAATGGTTTTGGAGTTTATTACCTTTGTGAGGTTAAGGATGAAGTA 1249
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1396 GTTATACTGTTTTGGAATGGTTTTGGAATTTATTACGTTTGTGAGGTTAAGGATGAAATA 1455
Query 1250 TCCGGCTGCAACACGGCCGTTCAAGATACCTGTAGGGGTTTTGGGATC-GATCCTCATGT 1308
||| ||||| || | |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1456 TCCAGCTGCCTCAAGACCGTTCAAGATACCTGTAGGGGTTTTGGGATCAG-TCCTCATGT 1514
Query 1309 GCATTCCACCAACAGTGTTGATCGGTGTCATCATGGCGCTTACTAACCTGAAAGTTGCGC 1368
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1515 GCATTCCTCCAACAGTACTGATCGGTGTCATCATGGCATTTACTAACCTGAAAGTTGCGC 1574
Query 1369 TGGTGAGCCTTGCAGCAATAGTGATTGGGCTAGTGTTGCAACCTTGTCTTAAGCAAGTGG 1428
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1575 TGGTGAGCCTTGCAGCTATAGTGATTGGGCTTGTGTTGCAACCTTGTCTTAAGCAAGTGG 1634
Query 1429 aaaaaaaGGGATGGCTCAAGTTCTCAACCAGCTCTCACCTACCAAACCTGATGGAGTAA- 1487
| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1635 AGAAAAAGGGATGGCTCAAGTTCTCAACAAGTTCTCACCTACCAAACCTGATGGAGTAAA 1694
Query 1488 GACC---GAAGATGGTGATGCTT 1507
|||| ||||||||||||||||
Sbjct 1695 GACCACCGAAGATGGTGATGCTT 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74347007145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5