BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939998
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05690.1 | Symbols: CPD, CYP90A, CYP90, CBB3, DWF3, CYP90A1 ... 2470 0.0
> AT5G05690.1 | Symbols: CPD, CYP90A, CYP90, CBB3, DWF3, CYP90A1
| Cytochrome P450 superfamily protein | chr5:1702688-1706780
REVERSE LENGTH=1713
Length=1713
Score = 2470 bits (1337), Expect = 0.0
Identities = 1413/1450 (97%), Gaps = 3/1450 (0%)
Strand=Plus/Plus
Query 4 TCATCATCAATCTTCTTCAATGgccttcaccgcctttctcctcctcctctcttccatcgc 63
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 58 TCATCATC-TTCTTCTTCAATGGCCTTCACCGCTTTTCTCCTCCTCCTCTCTTCCATCGC 116
Query 64 cgccggtttcctcctcctcctccgccgTACACGTTACCGTCGGATGGGTCTTCCTCCGGG 123
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 117 CGCCGGCTTCCTCCTCCTACTCCGCCGTACACGTTACCGTCGGATGGGTCTGCCTCCGGG 176
Query 124 AAGCCTCGGTCTTCCC-CTGATAGGAGAGACTTTTCAGCTGATCGGAGCTTACAAAACAG 182
|||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AAGCCTTGGTC-TCCCTCTGATAGGAGAGACTTTTCAGCTGATCGGAGCTTACAAAACAG 235
Query 183 AGAACCCTGAGCCTTTCATCGACGAGAGGGTGGCCCGGTACGGTTCGGTTTTCATGACGC 242
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 236 AGAACCCTGAGCCTTTCATCGACGAGAGAGTAGCCCGGTACGGTTCGGTTTTCATGACGC 295
Query 243 ATCTATTTGGTGAACCGACGGTTTTCTCAGCTGACCCGGAGACGAACCGGTTTGTTCTTC 302
|||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 296 ATCTTTTTGGTGAACCGACGATTTTCTCAGCTGACCCGGAAACGAACCGGTTTGTTCTTC 355
Query 303 AGAACGAAGGGAAGCTTTTCGAGTGTTCTTATCCTGCTTCCATTTGTAATCTTTTGGGGA 362
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 356 AGAACGAAGGGAAGCTTTTTGAGTGTTCTTATCCTGCTTCCATTTGTAACCTTTTGGGGA 415
Query 363 AACACTCTTTGCTTCTTATGAAAGGTTCTTTGCATAAACGTATGCACTCTCTTACCATGA 422
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 416 AACACTCTCTGCTTCTTATGAAAGGTTCTTTGCATAAACGTATGCACTCTCTCACCATGA 475
Query 423 GCTTTGCTAATTCTTCAATCATCAAAGACCATCTCATGCTTGATATTGACCGGTTAGTCC 482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 476 GCTTTGCTAATTCTTCAATCATTAAAGACCATCTCATGCTTGATATTGACCGGTTAGTCC 535
Query 483 GGTTTAATCTTGATTCTTGGTCTTCTCGGGTTCTCCTCATGGAAGAAGCCAAAAAGATAA 542
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 GGTTTAATCTTGATTCTTGGTCTTCTCGTGTTCTCCTCATGGAAGAAGCCAAAAAGATAA 595
Query 543 CGTTTGAGCTAACGGTGAAGCAGTTGATGAGCTTTGATCCAGGGGAATGGAGTGAGAGTT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CGTTTGAGCTAACGGTGAAGCAGTTGATGAGCTTTGATCCAGGGGAATGGAGTGAGAGTT 655
Query 603 TAAGGAAAGAGTATCTTCTTGTCATCGAAGGcttcttctctcttcctctccctctcttct 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TAAGGAAAGAGTATCTTCTTGTCATCGAAGGCTTCTTCTCTCTTCCTCTCCCTCTCTTCT 715
Query 663 cCACCACTTACCGCAAAGCCATCCAAGCGCGGAGGAAGGTGGCGGAGGCGTTGACGGTGG 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CCACCACTTACCGCAAAGCCATCCAAGCGCGGAGGAAGGTGGCGGAGGCGTTGACGGTGG 775
Query 723 TGGTGATGAAGAGGAGGGACGAGGAGGAAGAAGGAGCGGAGAGaaaaaaaGATATGCTTG 782
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 776 TGGTGATGAAAAGGAGGGAGGAGGAGGAAGAAGGAGCGGAGAGAAAGAAAGATATGCTTG 835
Query 783 CGGCGTTGCTTGCCGCGGATGATGGATTTTCCGATGAAGAGATTGTTGATTTCTTGGTGG 842
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 836 CGGCGTTGCTTGCGGCGGATGATGGATTTTCCGATGAAGAGATTGTTGACTTCTTGGTGG 895
Query 843 CTTTACTCGTCGCCGGTTATGAAACAACCTCCACAATCATGACTCTCGCCGTTAAATTTC 902
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 896 CTTTACTTGTCGCCGGTTATGAAACAACCTCCACGATCATGACTCTCGCCGTCAAATTTC 955
Query 903 TCACCGAGACTCCTTTAGCTCTTGCTCAACTCAAGGAAGAGCATGAAAAGATTAGGGCAA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCACCGAGACTCCTTTAGCTCTTGCTCAACTCAAGGAAGAGCATGAAAAGATTAGGGCAA 1015
Query 963 TGAAGAGTGATTCATATAGTCTTGAATGGAGTGATTACAAGTCAATGCCATTCACACAAT 1022
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGAAGAGTGATTCGTATAGTCTTGAATGGAGTGATTACAAGTCAATGCCATTCACACAAT 1075
Query 1023 GTGTGGTTAACGAGACGCTGCGAGTGGCTAACATCATCGGCGGTGTTTTCAGACGGGCAA 1082
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 GTGTGGTTAATGAGACGCTACGAGTGGCTAACATCATCGGCGGTGTTTTCAGACGTGCAA 1135
Query 1083 TGACGGATGTTGAGATCAAAGGTTATAAGATTCCAAAAGGGTGGAAAGTATTCTCATCGT 1142
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1136 TGACGGATGTTGAGATCAAAGGTTATAAAATTCCAAAAGGGTGGAAAGTATTCTCATCGT 1195
Query 1143 TTAGAGCGGTTCATTTAGACCCAAACCACTTCAAAGATGCTCGCACTTTCAACCCTTGGA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTAGAGCGGTTCATTTAGACCCAAACCACTTCAAAGATGCTCGCACTTTCAACCCTTGGA 1255
Query 1203 GATGGCAGAGCAACTCGGTAACAACAAGCCCTTCTAATGTGTTCACACCGTTTGGTGGAG 1262
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1256 GATGGCAGAGCAACTCGGTAACGACAGGCCCTTCTAATGTGTTCACACCGTTTGGTGGAG 1315
Query 1263 GGCCAAGGCTATGTCCCGGTTACGAGCTGGCTAGGGTTGCACTCTCTGTTTTCCTTCACC 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GGCCAAGGCTATGTCCCGGTTACGAGCTGGCTAGGGTTGCACTCTCTGTTTTCCTTCACC 1375
Query 1323 GCCTAGTGACTGGCTTCAGTTGGGTTCCTGCAGAGCAAGACAAGCTGGTTTTCTTTCCAA 1382
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GCCTAGTGACAGGCTTCAGTTGGGTTCCTGCAGAGCAAGACAAGCTGGTTTTCTTTCCAA 1435
Query 1383 CTACAAGAACGCAGAAACGGTACCCGATCTTCGTGAAGCGCCGTGATGTTGCTACTTGAA 1442
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1436 CTACAAGAACGCAGAAACGGTACCCGATCTTCGTGAAGCGCCGTGATTTTGCTACTTGAA 1495
Query 1443 GAAGAAGAGA 1452
||||||||||
Sbjct 1496 GAAGAAGAGA 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72138183165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5