BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940006 Length=968 Score E Sequences producing significant alignments: (Bits) Value AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase sub... 1618 0.0 AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein |... 1118 0.0 > AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subunit 8A | chr5:1735730-1738492 FORWARD LENGTH=1375 Length=1375 Score = 1618 bits (876), Expect = 0.0 Identities = 933/961 (97%), Gaps = 1/961 (0%) Strand=Plus/Plus Query 9 GATTCTCCGAAC-ATGGATGTGATTAAGACGCAACAGATATCAGCAAGGACGATCGAGAA 67 |||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 120 GATTCTTCAAACAATGGATGTGATTAAGACGCAACAGATTTCAGCAAGGACGATCGAGAA 179 Query 68 AGTGGTTGTTCATCCACTCGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAA 127 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AGTGGTTGTTCATCCACTAGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAA 239 Query 128 GGATTCACGCAAGCGTGTCGTCGGTGTTCTTCTCGGGAGCAGCTCCCGTGGTATCGTTGA 187 ||||||| ||||||||||||||||||||||||| ||||||||||| |||||| | ||||| Sbjct 240 GGATTCAAGCAAGCGTGTCGTCGGTGTTCTTCTGGGGAGCAGCTCTCGTGGTGTTGTTGA 299 Query 188 TGTCACCAACAGCTACGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTT 247 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGTCACCAACAGCTATGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTT 359 Query 248 TCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGA 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGA 419 Query 308 GCACGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCA 367 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCA 479 Query 368 CGCCTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAA 427 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CGCGTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAA 539 Query 428 AGAACTTGGAATCCCTACAAAAGCATACTATGCAGTGGAGGAGGTCAAGGAGAATGCTAC 487 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 540 AGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGAATGCTAC 599 Query 488 TCAGAAAAGCCAGAAAGTTTTCGTTCATGTATCTACAGAAATTGCTGCTCATGAAGTCGA 547 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 600 TCAGAAAAGCCAGAAAGTTTTCGTTCATGTGTCTACAGAAATTGCTGCTCATGAAGTTGA 659 Query 548 GGAAATCGGCGTGGAACATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACTCTGGC 607 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || Sbjct 660 GGAAATCGGCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGC 719 Query 608 GACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGAT 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGAT 779 Query 668 CCGGAGTTACCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATA 727 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATA 839 Query 728 CCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGC 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGC 899 Query 788 CTTTTCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTATCATCCCTCATTCGGAG 847 ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 900 CTTCTCCGTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCATTCGGAG 959 Query 848 TGTAATTGCACTCCACAACTTGATCAACAATAAGTTGCTGAACAAGGAACATGAAAAAGC 907 ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 960 TGTAATTGCGCTCCACAACTTGATCAACAACAAGTTACTGAACAAGGAACATGAAAAAGC 1019 Query 908 AGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGGCTT 967 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1020 AGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGACTT 1079 Query 968 A 968 | Sbjct 1080 A 1080 > AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein | chr3:3528890-3531724 FORWARD LENGTH=1439 Length=1439 Score = 1118 bits (605), Expect = 0.0 Identities = 821/925 (89%), Gaps = 15/925 (2%) Strand=Plus/Plus Query 18 AAC-ATGGATGTGATTAAGACGCAACAGATATCAGCAAGGACGATCGAGAAAGTGGTTGT 76 ||| |||||||| || ||||||||||| ||||| |||||||| |||||||||||| | || Sbjct 96 AACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGGACAATCGAGAAAGTGATCGT 155 Query 77 TCATCCACTCGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAAGGATTCAC- 135 ||| ||||| |||||||||||||||||||||||||||||||| || || ||||| ||| Sbjct 156 TCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAATCGTGTAGCCAAGGA--CACG 213 Query 136 -GCAAGCGTGTCGTCGGTGTTCTT-CTCGGGAGCAGCTCCCGTGGTATC-GTTGATGTCA 192 ||||||| |||||||| ||| || ||||| || ||||| ||||||| | ||||| |||| Sbjct 214 AGCAAGCGCGTCGTCGGCGTT-TTGCTCGGAAGTAGCTCTCGTGGTA-CTGTTGACGTCA 271 Query 193 CCAACAGCTACGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTTTCTTG 252 ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| Sbjct 272 CCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTG 331 Query 253 ATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGAGCACG 312 ||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct 332 ATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGCTAAGGAGCATA 391 Query 313 TTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCCT 372 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 392 TTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCTT 451 Query 373 TGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAAAGAAC 432 | ||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 452 TATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAACCTAAAGAAC 511 Query 433 TTGGAATCCCTACAAAAGCATACTATGCAGTGGAGGAGGTCAAGGAGAATGCTACTCAGA 492 |||||||||| ||||||||||||||||| || |||||||| || ||||||||||| |||| Sbjct 512 TTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAGGTGAAAGAGAATGCTACCCAGA 571 Query 493 AAAGCCAGAAAG-TTTTCGTTCATGTATCTACAGAAATTGCTGCTCATGAAGTCGAGGAA 551 ||||||| | || |||| || || || ||||||||||||| ||||||||||| |||||| Sbjct 572 AAAGCCA-ACAGGTTTTTGTACACGTGCCTACAGAAATTGCAGCTCATGAAGTTGAGGAA 630 Query 552 ATCGGCGTGGAACATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACTCT-GGCGAC 610 || || ||||||||||||||||||||||| ||||||||||| |||||||| || ||| || Sbjct 631 ATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTAC-CTTGGCAAC 689 Query 611 TGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGATCCG 670 |||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||| Sbjct 690 TGAGGTCACTGCGAAACTTACTGCTCTGAAGGGATTGGATGCACGACTTCGGGAGATCCG 749 Query 671 GAGTTACCTTGACCTTGTAATCGAAGGAAAGCTCCC-TCTAAACCATGAGATTTTATACC 729 || ||||||||||||||||||||||||||| ||||| | |||||||||| || ||||||| Sbjct 750 GACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCAT-TAAACCATGAAATCTTATACC 808 Query 730 ATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCT 789 |||| |||||||| |||||||||||||||||| |||| || ||||||||||| || |||| Sbjct 809 ATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAGTTGGTTAAAGCCT 868 Query 790 TTTCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTATCATCCCTCATTCGGAGTG 849 || |||| |||||||||||||||||||| || ||||| || || || || || || |||| Sbjct 869 TTGCAGTAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTTCGCTTATCCGAAGTG 928 Query 850 TAATTGCACTCCACAACTTGATCAACAATAAGTTGCTGAACAAGGAACATGAAAAAGCAG 909 |||| || ||||||| ||||||||||| |||||| |||| ||||||||||||||||||| Sbjct 929 TAATCGCCCTCCACAGTTTGATCAACAACAAGTTGTTGAATAAGGAACATGAAAAAGCAG 988 Query 910 AGGACTCAAAGCCTGTGGCCATACC 934 |||||||||||||||| | |||||| Sbjct 989 AGGACTCAAAGCCTGTTGACATACC 1013 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47370800621 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5