BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940006
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase sub... 1618 0.0
AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein |... 1118 0.0
> AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subunit
8A | chr5:1735730-1738492 FORWARD LENGTH=1375
Length=1375
Score = 1618 bits (876), Expect = 0.0
Identities = 933/961 (97%), Gaps = 1/961 (0%)
Strand=Plus/Plus
Query 9 GATTCTCCGAAC-ATGGATGTGATTAAGACGCAACAGATATCAGCAAGGACGATCGAGAA 67
|||||| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 GATTCTTCAAACAATGGATGTGATTAAGACGCAACAGATTTCAGCAAGGACGATCGAGAA 179
Query 68 AGTGGTTGTTCATCCACTCGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAA 127
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGTGGTTGTTCATCCACTAGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAA 239
Query 128 GGATTCACGCAAGCGTGTCGTCGGTGTTCTTCTCGGGAGCAGCTCCCGTGGTATCGTTGA 187
||||||| ||||||||||||||||||||||||| ||||||||||| |||||| | |||||
Sbjct 240 GGATTCAAGCAAGCGTGTCGTCGGTGTTCTTCTGGGGAGCAGCTCTCGTGGTGTTGTTGA 299
Query 188 TGTCACCAACAGCTACGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTT 247
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTCACCAACAGCTATGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTT 359
Query 248 TCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGA 419
Query 308 GCACGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCA 367
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCA 479
Query 368 CGCCTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAA 427
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGCGTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAA 539
Query 428 AGAACTTGGAATCCCTACAAAAGCATACTATGCAGTGGAGGAGGTCAAGGAGAATGCTAC 487
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 AGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGAATGCTAC 599
Query 488 TCAGAAAAGCCAGAAAGTTTTCGTTCATGTATCTACAGAAATTGCTGCTCATGAAGTCGA 547
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 600 TCAGAAAAGCCAGAAAGTTTTCGTTCATGTGTCTACAGAAATTGCTGCTCATGAAGTTGA 659
Query 548 GGAAATCGGCGTGGAACATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACTCTGGC 607
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 660 GGAAATCGGCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGC 719
Query 608 GACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGAT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGAT 779
Query 668 CCGGAGTTACCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATA 727
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATA 839
Query 728 CCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGC 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGC 899
Query 788 CTTTTCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTATCATCCCTCATTCGGAG 847
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 CTTCTCCGTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCATTCGGAG 959
Query 848 TGTAATTGCACTCCACAACTTGATCAACAATAAGTTGCTGAACAAGGAACATGAAAAAGC 907
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 960 TGTAATTGCGCTCCACAACTTGATCAACAACAAGTTACTGAACAAGGAACATGAAAAAGC 1019
Query 908 AGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGGCTT 967
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 AGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGACTT 1079
Query 968 A 968
|
Sbjct 1080 A 1080
> AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein
| chr3:3528890-3531724 FORWARD LENGTH=1439
Length=1439
Score = 1118 bits (605), Expect = 0.0
Identities = 821/925 (89%), Gaps = 15/925 (2%)
Strand=Plus/Plus
Query 18 AAC-ATGGATGTGATTAAGACGCAACAGATATCAGCAAGGACGATCGAGAAAGTGGTTGT 76
||| |||||||| || ||||||||||| ||||| |||||||| |||||||||||| | ||
Sbjct 96 AACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGGACAATCGAGAAAGTGATCGT 155
Query 77 TCATCCACTCGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCTAAGGATTCAC- 135
||| ||||| |||||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 156 TCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAATCGTGTAGCCAAGGA--CACG 213
Query 136 -GCAAGCGTGTCGTCGGTGTTCTT-CTCGGGAGCAGCTCCCGTGGTATC-GTTGATGTCA 192
||||||| |||||||| ||| || ||||| || ||||| ||||||| | ||||| ||||
Sbjct 214 AGCAAGCGCGTCGTCGGCGTT-TTGCTCGGAAGTAGCTCTCGTGGTA-CTGTTGACGTCA 271
Query 193 CCAACAGCTACGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTTTCTTG 252
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 272 CCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTG 331
Query 253 ATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCAAGGAGCACG 312
||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 332 ATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGCTAAGGAGCATA 391
Query 313 TTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCCT 372
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 392 TTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCTT 451
Query 373 TGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGCCTAAAGAAC 432
| ||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 452 TATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAACCTAAAGAAC 511
Query 433 TTGGAATCCCTACAAAAGCATACTATGCAGTGGAGGAGGTCAAGGAGAATGCTACTCAGA 492
|||||||||| ||||||||||||||||| || |||||||| || ||||||||||| ||||
Sbjct 512 TTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAGGTGAAAGAGAATGCTACCCAGA 571
Query 493 AAAGCCAGAAAG-TTTTCGTTCATGTATCTACAGAAATTGCTGCTCATGAAGTCGAGGAA 551
||||||| | || |||| || || || ||||||||||||| ||||||||||| ||||||
Sbjct 572 AAAGCCA-ACAGGTTTTTGTACACGTGCCTACAGAAATTGCAGCTCATGAAGTTGAGGAA 630
Query 552 ATCGGCGTGGAACATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACTCT-GGCGAC 610
|| || ||||||||||||||||||||||| ||||||||||| |||||||| || ||| ||
Sbjct 631 ATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTAC-CTTGGCAAC 689
Query 611 TGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAGATCCG 670
|||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 690 TGAGGTCACTGCGAAACTTACTGCTCTGAAGGGATTGGATGCACGACTTCGGGAGATCCG 749
Query 671 GAGTTACCTTGACCTTGTAATCGAAGGAAAGCTCCC-TCTAAACCATGAGATTTTATACC 729
|| ||||||||||||||||||||||||||| ||||| | |||||||||| || |||||||
Sbjct 750 GACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCAT-TAAACCATGAAATCTTATACC 808
Query 730 ATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCT 789
|||| |||||||| |||||||||||||||||| |||| || ||||||||||| || ||||
Sbjct 809 ATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAGTTGGTTAAAGCCT 868
Query 790 TTTCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTATCATCCCTCATTCGGAGTG 849
|| |||| |||||||||||||||||||| || ||||| || || || || || || ||||
Sbjct 869 TTGCAGTAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTTCGCTTATCCGAAGTG 928
Query 850 TAATTGCACTCCACAACTTGATCAACAATAAGTTGCTGAACAAGGAACATGAAAAAGCAG 909
|||| || ||||||| ||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 929 TAATCGCCCTCCACAGTTTGATCAACAACAAGTTGTTGAATAAGGAACATGAAAAAGCAG 988
Query 910 AGGACTCAAAGCCTGTGGCCATACC 934
|||||||||||||||| | ||||||
Sbjct 989 AGGACTCAAAGCCTGTTGACATACC 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47370800621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5