BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940007
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05790.1 | Symbols: | Duplicated homeodomain-like superfami... 1325 0.0
AT3G11280.1 | Symbols: | Duplicated homeodomain-like superfami... 433 2e-120
> AT5G05790.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr5:1740572-1742028 REVERSE LENGTH=1343
Length=1343
Score = 1325 bits (717), Expect = 0.0
Identities = 813/860 (95%), Gaps = 3/860 (0%)
Strand=Plus/Plus
Query 3 TCTCGTAGCCTTTACCCGATGGAAACTCTGCATCCACTACTCTCACACGTGCCAACCTCT 62
|||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 340 TCTCGTAGCCTTTAAACGATGGAGACTCTGCATCCACTACTCTCGCACGTGCCAACTTCT 399
Query 63 GACCACCGTTTTGTAGTTCAAGAGATGATGTGCTTGCAAAGCTCGAGCTGGACTAAAGAA 122
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GACCACCGGTTTGTAGTTCAAGAGATGATGTGCTTGCAAAGCTCGAGCTGGACTAAAGAA 459
Query 123 GAGAACAAGAAGTTTGAGCGAGCTCTCGCTGTCTACGCTGATGACACGCCTGACCGCTGG 182
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 460 GAGAACAAGAAGTTTGAGCGAGCTCTTGCTGTCTACGCTGATGACACGCCTGATCGCTGG 519
Query 183 TTCAAAGTTGCTGCTATGATCCCTGGAAAAACCATATCAGATGTCATGAGGCAATACTCT 242
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 520 TTCAAAGTTGCTGCTATGATCCCTGGAAAGACCATATCAGATGTCATGAGGCAATACTCT 579
Query 243 AAACTCGAAGAAGACCTCTTCGATATCGAAGCAGGACTTGTCCCGATCCCGGGTTACCAT 302
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 580 AAGCTTGAAGAAGACCTCTTCGATATCGAAGCAGGACTTGTCCCGATCCCGGGTTACCGT 639
Query 303 TCAGCTACTCCCTGTGGATTTGATCAGGTTGTGAGTCCGCGTGACTTTGATGCGTATCGC 362
|||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 640 TCAGTTACTCCTTGTGGATTTGATCAGGTTGTGAGTCCACGTGACTTTGATGCGTATCGT 699
Query 363 AAACTACCTAATGGAGCCAGAGGATTTGATCAAGACCGTAGAAAAGGAGTCCCATGGACA 422
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 700 AAACTTCCTAATGGAGCCAGAGGATTTGATCAAGACCGTAGGAAAGGAGTTCCATGGACG 759
Query 423 GAGGAAGAACACAGGAGATTCTTGTTAGGGCTTCTCAAGTACGGGAAAGGAGATTGGAGA 482
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 760 GAGGAAGAACACAGGAGATTCTTGTTAGGGCTTCTCAAGTATGGGAAAGGAGATTGGAGA 819
Query 483 AACATATCGAGGAACTTTGTGGGATCAAAAACACCAACTCAGGTAGCAAGCCATGCCCAA 542
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 820 AACATATCGAGGAACTTTGTGGGATCAAAAACACCAACTCAGGTTGCAAGTCATGCCCAA 879
Query 543 AAGTACTACCAGAGACAGCTTTCCGGTGCGAAAGACAAACGCCGGCCTAGCATTCACGAC 602
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 880 AAGTACTACCAAAGACAGCTTTCCGGTGCGAAAGACAAACGACGGCCTAGCATTCACGAC 939
Query 603 ATCACCACCGTCAATCTTCTCAACGCAAATCTTAGCCGTCCATCTTCTGATAACGGTTGC 662
||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||
Sbjct 940 ATCACCACCGTCAATCTTCTCAATGCCAATCTTAGCCGTCCATCGTCTGATCACGGTTGC 999
Query 663 TTAGTCTCACATCAGGCCGAGCCAAAACTAGGGTTCACCGACAGGGATAATGCAGAGGAG 722
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1000 TTAGTCTCAAAACAGGCCGAGCCGAAACTAGGGTTCACCGACAGGGATAATGCAGAGGAG 1059
Query 723 GGAGTGAAGTTTCTTGGTCAAAATCTTTCCTCGGTCTTCTCTTCCTACGATCCTGCCGTT 782
||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||| ||
Sbjct 1060 GGAGTTATGTTTCTTGGTCAGAATCTATCCTCGGTCTTCTCTTCCTACGATCCTGCCATT 1119
Query 783 AAGTTCGCAGGAGCAAATCTTTACGGTGAAGGAGGTTACTGTATC--ACAAGATCCTGAA 840
||||| | ||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1120 AAGTTTTCCGGAGCAAATGTTTACGGTGAAGGAGGTTACTGTATCTCACAAGATCTTGAA 1179
Query 841 AAGAGAAAATGTTGAATTTT 860
| ||||||||| |||||||
Sbjct 1180 ACGAGAAAATGA-GAATTTT 1198
> AT3G11280.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr3:3533255-3534847 REVERSE LENGTH=1242
Length=1242
Score = 433 bits (234), Expect = 2e-120
Identities = 509/636 (80%), Gaps = 42/636 (7%)
Strand=Plus/Plus
Query 21 ATGGAAACTCTGCATCCACTACTCTCACACGTGCCAACCTCTGACCACCGTTTTGTAGTT 80
||||| |||||||||||| | ||||||| | | || | |||||||||||| || || |||
Sbjct 229 ATGGAGACTCTGCATCCA-TTCTCTCAC-C-TACCTATCTCTGACCACCGGTTCGTTGTT 285
Query 81 CAAGAGATGATGTGCTTGCAAAG--C---T--C-G-AGCTGGACTAAAGAAGAGAACAAG 131
||||||||| || |||| || || | | | | ||||||||||||||||||||||||
Sbjct 286 CAAGAGATGGTGAGCTTACACAGCTCGAGTAGCGGTAGCTGGACTAAAGAAGAGAACAAG 345
Query 132 AAGTTTGAGCGAGCTCTCGCTG-TCTACGCTGATGACACGCCTGACCGCTGGTTCAAAGT 190
| ||| || |||||||| || | | |||||||| ||| ||||||| |||||||| |||||
Sbjct 346 ATGTTCGAACGAGCTCTTGC-GATATACGCTGAAGACTCGCCTGATCGCTGGTTTAAAGT 404
Query 191 TGCTGCTATGATCCCTGGAAAAACCATATCAGATGTCATGAGGCAATACT-CTAAACTCG 249
|||| | |||||||||||||| || | | ||||| |||| |||||| | ||| || |
Sbjct 405 TGCTTCCATGATCCCTGGAAAGACTGTTTTTGATGTTATGAAGCAATA-TAGTAAGCTTG 463
Query 250 AAGAAGACCTCTTCGATATCGAAGCAGGACTTG-TCCCGATCCCGGGTTA-CCATTCAGC 307
|||||||| | |||||||| |||||||||| || |||| || || ||||| || | ||||
Sbjct 464 AAGAAGACGTTTTCGATATTGAAGCAGGACGTGTTCCC-ATTCCTGGTTATCC-TGCAGC 521
Query 308 TACTCCCTGTGGATTTGATCAGGTTGTGAGTCCGCGTGACTTTGATGCGTATCGCAAACT 367
| | | | | ||| |||| ||| | || ||| || || ||| ||||
Sbjct 522 T--T-CTTCT-CCCTTG---GGGTT-TGA---CACG-GAC----AT--GTGTCGTAAACG 563
Query 368 ACCTAATGGAGCCAGAGGATTTGATCAAGACCGTAGA-AAAGGAGTCCCATGGACAGAGG 426
|||| |||||| ||||||| ||||||||| || | | ||||||||||| ||||||||||
Sbjct 564 GCCTAGTGGAGCTAGAGGATCTGATCAAGATCG-AAAGAAAGGAGTCCCTTGGACAGAGG 622
Query 427 AAGAACACAGGAGATTCTTGTTAGGGCTTCTCAAGTACGGGAAAGGAGATTGGAGAAACA 486
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 623 AAGAACACAGGAGATTCTTGTTAGGCCTTCTCAAGTACGGTAAAGGAGATTGGAGAAACA 682
Query 487 TATCGAGGAACTTTGTGG-GATCAAAAACACCAACTCAGGTAGCAAGCCATGCCCAAAAG 545
||||||| ||||| |||| | ||||| || ||||| || || || ||||| |||||||||
Sbjct 683 TATCGAGAAACTTCGTGGTG-TCAAAGACGCCAACGCAAGTGGCGAGCCACGCCCAAAAG 741
Query 546 TACTACCAGAGACAGCTTTCCGGTGCGAAAGACAAACGCCGGCCTAGCATTCACGACATC 605
|| |||||||||||||| ||||| || || ||||||||| |||| || || || ||||||
Sbjct 742 TATTACCAGAGACAGCTCTCCGGAGCCAAGGACAAACGCAGGCCAAGTATCCATGACATC 801
Query 606 ACCACCGTCAATCTTCTCAACGCAAATCTTAGCCGT 641
|| |||| |||||||||||| || ||||| | ||||
Sbjct 802 ACAACCGGCAATCTTCTCAATGCCAATCTCAACCGT 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5