BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940009
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05810.1 | Symbols: ATL43 | RING/U-box superfamily protein |... 1744 0.0
> AT5G05810.1 | Symbols: ATL43 | RING/U-box superfamily protein
| chr5:1746830-1748255 FORWARD LENGTH=1426
Length=1426
Score = 1744 bits (944), Expect = 0.0
Identities = 1052/1104 (95%), Gaps = 8/1104 (1%)
Strand=Plus/Plus
Query 1 ATACCTTCACTTCCTCTTTCATGCCGGGAATCGCCGTCGTTATCGCCGTACTCACCGCGT 60
||| ||||||||||||| ||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 89 ATAACTTCACTTCCTCTCTCATGCCCGGAATCGCAGTCGTTATCGCCGTCCTCACTGCGT 148
Query 61 TTTTCTCTATCACTTTCTTACTTCTCCTCTACGTCAAACACTGTAAACGACGAAGCGGCT 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 149 TTTTCTCTCTCACTTTCTTACTTCTCCTCTACGTCAAACACTGTAAACGACGAAACGGCA 208
Query 121 CCGTTTACGTAAACCACCCGCAGCGTTTCGCAATCTCTAGATACGGAGGAGGATATTACA 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 209 GCGTTTACGTAAACCACCCGCAGCGTTTCGCAATCACTAGATACGGAGGAGGATATTACA 268
Query 181 ACGGTGGAGGAGTAGGAGGAGGAAGAAAAAATTCCGGTATAGACCGGTCCGTGATTGAAT 240
||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 269 ACGGTGGAGGAGTAGTAGGAGGAAGGAAAAACTCCGGTATAGACCGGTCCGTGATTGAAT 328
Query 241 CTTTACCGGTTTTCCGGTTTGGTGCATTGAGCGGCCACAAGGATGGTTTAGAGTGCGCCG 300
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 329 CTTTACCGGTTTTCCGGTTTGGTGCATTAAGCGGTCACAAGGATGGTTTAGAGTGCGCCG 388
Query 301 TGTGTCTCGCTCGGTTCGAACCGGCGGAAGTTCTGAGGTTATTGCCGAAATGTAAACACG 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 389 TGTGTCTCGCTCGGTTCGAACCGACGGAAGTTCTGAGGTTATTGCCGAAATGTAAACACG 448
Query 361 CCTTCCACGTGGAATGTGTTGACACGTGGCTCGACGCTCACTCCACTTGCCCGCTTTGCC 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 449 CCTTCCACGTGGAATGTGTTGACACGTGGCTTGACGCTCACTCCACTTGCCCGCTTTGCC 508
Query 421 GTTACCGGGTTGACCCGGAAGATATACTCTTGATCGGTGATTGTAACTCCTGGTTCGAGC 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GTTACCGGGTCGACCCGGAAGATATACTCTTGATCGGTGATTGTAACTCCTGGTTCGAGC 568
Query 481 TCC-GTTTCTCTAAAGAAGAATCAAACA--G-TATTAGTAATCCTCCCGGTTTAACCCGG 536
||| | ||||||||||| |||||||||| | || || ||||||||||||||||||||||
Sbjct 569 TCCAG-TTCTCTAAAGATGAATCAAACAGTGTTAATAATAATCCTCCCGGTTTAACCCGG 627
Query 537 TTTGTTCCGGTTAGTCGAATATCCGGTCGTCATTCATCGGCTGGTGAACGAGCGAGTCGA 596
||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 628 TTTATTCCGGTTAGTCGAATTTCCGGTCGTCATTCCTCGGCTGGTGAACGAGCGAGTCGA 687
Query 597 CTCAACGAGATTAGAACATCGTCGTCGTCTAAATCGAATCCGATGTCGTTTCGGAGATCA 656
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 688 CTCAACGAGATTAGAACATCTTCGTCGTATAAATCGAATCCGATGTCGTTTCGGAGATCA 747
Query 657 CTCGATAGCTCTCTGAAAGTTAACGACGCCGGCGAGGAAAAATCGGAATCTGTCGCCGTT 716
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 748 CTCGATAGCTCTCTGAAAGTTAACGACGCCGGCGAGGAGAAATCGGAATCTGTCGCCGTT 807
Query 717 AATTGCTTGGATCGTCTACAGAGAAAAGACGGATTGTTGTTGATTCCGAATCAGGAGAG- 775
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 808 AATTGCTTGGATCGTCTACAGAGAAAAGACGGATTGTTGTTGATTCCGAATCGGGAGAGC 867
Query 776 TATGGAAGGGAGATTTGAGCACCGGATAATAATCTCCGGCGGGAATCTAGATGATCAGAG 835
| | || ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct 868 T-TTGAGGGGAGATTTGAGCACCGGATAATTATCTCCGGCGGGAATCGAGACGATCAGAG 926
Query 836 GTGGAGCGAGGTTAGGCCGTCGGATCTTTTGTACTTACGGTCGGAGATGATACTAAGTGA 895
||||||||| || |||||||||||||||||||| ||||| || ||||||||||| || ||
Sbjct 927 GTGGAGCGAAGTAAGGCCGTCGGATCTTTTGTATTTACGATCAGAGATGATACTCAGCGA 986
Query 896 TTGCCGGAAATTAGCTGCGGCGGAGGGCGGCAGAGATGTAATTAACGGGAGAAGTGTGTC 955
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 987 TTGCCGGAAATTAGCTGCGGCGGAGGGTGGCAGAGATGTAATTAACGGGAGAAGTGTGTC 1046
Query 956 GGAGTTAACGGGAATTGAGAGACGGAGGAGATGGGGAGGAGAGCCGAGACAACGACAAGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GGAGTTAACGGGAATTGAGAGACGGAGGAGATGGGGAGGAGAGCCGAGACAACGACAAGC 1106
Query 1016 CACGGCGGTGATTTCGAGGTGGCTCGCTTGGTCCCACCGTGCCTCCGCTTCCAGCATTGT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 CACGGCGGTGATTTCGAGGTGGCTCGCTTGGTCCCACCGTGCCTCCGCTTCCAGCATTGT 1166
Query 1076 TTAAAATTTATATTTTTGGTCCTT 1099
|||||||||||||| | | |||||
Sbjct 1167 TTAAAATTTATATTAT-GATCCTT 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5