BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940012
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 976 0.0
> AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:1755766-1757085 FORWARD LENGTH=1019
Length=1019
Score = 976 bits (528), Expect = 0.0
Identities = 625/670 (93%), Gaps = 13/670 (2%)
Strand=Plus/Plus
Query 1 TCATCTGGGTCTCTACGAATATGGAATCTGTACAGCCACATCTTGAGACCCTTGTCGCTG 60
||||| |||||| ||||||||||||||| |||||||||||||| |||||| ||||| |||
Sbjct 125 TCATCCGGGTCTATACGAATATGGAATCCGTACAGCCACATCTCGAGACCTTTGTCTCTG 184
Query 61 TTAAAGTAATCCATGGCTCAAGTGGCTGTGGTGATGGCTCTGAAGATGATGGGGAGCTTC 120
||||||||||| || ||||||||||| | ||||||| | ||||| |||| ||
Sbjct 185 TTAAAGTAATCAATAGCTCAAGTGGC--T-GTGATGG--C-------GATGGAGAGCCTC 232
Query 121 GTCGGAGCTCCGGTGCGGTGGAGAATGAGGAAGAGATAGTGAAAGATGAGGAGAGGAGAT 180
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 233 GTCGGAGCTCCGGTGCGGTGGAGAAGGAGGAAGAAATAGTGAAAGATGAGGAGAGGAGAT 292
Query 181 CCAATGCGTCGGTGTGTTCGGTGGAAGTAGATCTGGAGCTTGGATTGCCTGAGAAAGTTG 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 293 CCAATGCGTCGGTGTGTTCGGTGGAAATAGATCTGGAGCTTGGATTGCCTGAGAAAGTTG 352
Query 241 TACATTTGTCGCAATCTGAGAGAGATTGCAGGATTTGTCACATGAGTTTGGATGCAGCGA 300
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 353 TACATTTGTCGCAATCTGAGAGAGATTGCAGGATTTGTCACATGAGCTTAGATGCAGCGA 412
Query 301 ATCTTGAATCTGGTGTTCCCATTGAGCTAGGCTGTTCTTGTAAAGCTGATCTCGCTGCTG 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 413 ATCTTGAATCTGGTGTTCCCATTGAGCTTGGCTGTTCTTGTAAAGCTGATCTCGCTGCTG 472
Query 361 CTCATAAGCACTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACAAAATCTGTGAAGTAT 420
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 473 CTCATAAACACTGTGCTGAGACTTGGTTCAAGATCAAAGGAAACAAAATCTGTGAAGTTT 532
Query 421 GTGGTTCGATTGCGGGTAATGTTGTTGGAAGTGTGGAGGTGGAGTCTGAGGAAAGCCGGA 480
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 533 GTGGGTCGATTGCGGGTAATGTTGTTGGAAGTGTTGAGGTGGAGTCTGAGGAAAGCCGGA 592
Query 481 ATGAAGCAAATGGTGTAGAGAGTCAAACTCTGCGAACATCCGGTCCGCGATTGGCGGAAG 540
||||||||||||||||||||| || ||||||| ||||||| ||||| ||||||| |||||
Sbjct 593 ATGAAGCAAATGGTGTAGAGAATCTAACTCTGAGAACATCTGGTCCACGATTGGTGGAAG 652
Query 541 CTAGAAGCTTCTGGCATGGTCACCGGTTCTTGAATTTCCTTTTAGCTTGTATGGTCTTTG 600
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GTAGAAGCTTCTGGCAAGGTCACCGGTTCTTGAATTTCCTTTTAGCTTGTATGGTCTTTG 712
Query 601 CATTTGTGATCTCATGGCTCTTCCACTTCAATGTTCCCTCTACATAGCAAAACAAGTAAT 660
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 713 CATTTGTTATCTCATGGCTCTTCCACTTCAATGTTCCTTCTACATAGCAACACAAGTAAT 772
Query 661 GCCTCAACTC 670
| |||||||
Sbjct 773 GT-TCAACTC 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5