BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940017
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05890.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 412 2e-114
AT5G05860.1 | Symbols: UGT76C2 | UDP-glucosyl transferase 76C2 ... 311 9e-84
AT5G05900.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 292 3e-78
AT5G05880.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 115 8e-25
> AT5G05890.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:1772543-1774113 FORWARD LENGTH=1493
Length=1493
Score = 412 bits (223), Expect = 2e-114
Identities = 286/315 (91%), Gaps = 9/315 (3%)
Strand=Plus/Plus
Query 97 AGATCCCAGATGGCTTGTACGAAACAGAGAAAAGAACTAACAATACCAAACTTCTCCTAA 156
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 200 AGATCCCAGATGGCTTGTCCGAAACAGAGAAAAGAACTAACAATACCAAACTTCTCCTAA 259
Query 157 CACTTATCAACCGGAACTGTGAGTCTCCGTTTCGTGACTGTTTGACTAAACCGTTGCAGT 216
| ||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 260 CGCTTCTCAACCGGAACTGTGAGTCTCCGTTTCGTGAATGTTTGAGTAAACTGTTGCAGT 319
Query 217 CTGCAGATTCAGAAACAGGGGAAGATAAACAGAGGATTAGCTGTTTGATCGATGATTTTG 276
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 320 CTGCAGATTCAGAAACAGGGGAAGAGAAACAGAGGATTAGCTGTTTGATCGCTGATTCTG 379
Query 277 GATGGATGTTCGCACAACCCATTGCTCA-A--------CTCCCGAGATTAGTCGTCAGTG 327
||||||||||| |||||||||||||||| | ||||| | ||| ||| ||||||
Sbjct 380 GATGGATGTTCACACAACCCATTGCTCAGAGTTTGAAACTCCCAATATTGGTCCTCAGTG 439
Query 328 AGTTTACAGTCTCCTTCTTTCGAAGCCAATTTGTTCTTCCTAAGCTCCGCCGTGAAGTGT 387
||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 440 TGTTTACAGTCTCCTTCTTTCGCTGCCAATTTGTTCTTCCTAAGCTTCGGCGTGAAGTGT 499
Query 388 ATCTTCCACCTCAAG 402
||||||||| |||||
Sbjct 500 ATCTTCCACTTCAAG 514
Score = 126 bits (68), Expect = 4e-28
Identities = 88/96 (92%), Gaps = 7/96 (7%)
Strand=Plus/Plus
Query 1 TACAAGGCTGCATCAACCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAGTCAAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 71 TACAAGGCTGCATCAACCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAG----G- 125
Query 61 GGTTTCTCAATCACTGTGATCCACACGTGCTTCAAC 96
|||||| |||||||||||||||||||||||||||
Sbjct 126 --TTTCTCCATCACTGTGATCCACACGTGCTTCAAC 159
> AT5G05860.1 | Symbols: UGT76C2 | UDP-glucosyl transferase 76C2
| chr5:1765507-1767455 FORWARD LENGTH=1498
Length=1498
Score = 311 bits (168), Expect = 9e-84
Identities = 210/231 (91%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 716 AGATTCGGAAGCAGAGGACTCTGTTCTTGAGTTCCCGCCACCTCAAAAGAGAGATCTTTG 775
||| |||||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 512 AGAATCGGAAGCAGAGGACTCTGTTCCTGAGTTCCCGCCGCTTCAAAAGAGAGATCTTTC 571
Query 776 GAGGGTTTTCGGGGAATTCGGAGAGAAACTCGATCCGTTCTTACATGTTGTGGTCGAAAC 835
| |||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 572 AAAGGTTTTCGGGGAGTTCGGAGAGAAACTCGATCCGTTCTTACATGCTGTAGTCGAAAC 631
Query 836 GACTATTACATCTTCAGGGCTAATGTACATGTCCTGCAAAGAGCTTGAGAAAGATTCGTT 895
||| || | |||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 632 GACAATAAGATCTTCAGGGTTAATATACATGTCCTGCGAAGAGCTTGAGAAAGATTCGTT 691
Query 896 GACTCTTTCTAACGAAATTTTCAAAGTTCCAATCTTTGCGATTGGTCCGTT 946
||||||||||||||||||||| |||||||| | ||||| |||||||||||
Sbjct 692 GACTCTTTCTAACGAAATTTTTAAAGTTCCGGTTTTTGCAATTGGTCCGTT 742
> AT5G05900.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:1774513-1776381 FORWARD LENGTH=1353
Length=1353
Score = 292 bits (158), Expect = 3e-78
Identities = 267/316 (84%), Gaps = 21/316 (7%)
Strand=Plus/Plus
Query 95 ACAGATCCCAGATGGCTTGTAC-GAAACAGAGAAAAGAACTAACAATACCAAACTTCTCC 153
|||||||||||||||||||| | |||||||||| ||||||| || ||| || ||||||||
Sbjct 174 ACAGATCCCAGATGGCTTGT-CTGAAACAGAGACAAGAACTCACGATATCACACTTCTCC 232
Query 154 TAACACTTATCAACCGGAA-CTGTGAGTCTCCGTTTCGTGACTGTTTGACTAAACCGTTG 212
|||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||||| |||
Sbjct 233 TAACGCTTCTCAACC-GAAGCTGTGAGTCTCCATTTCGTGAATGTTTGACTAAACTTTTG 291
Query 213 CAGTCTGCAGATTCAGAAACAGGGGAAGATAAACAGAGGATTAGCTGTTTGATCGATGAT 272
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 292 CAGTCTGCAGATTCAGAAACAGGGGAAGAGAAACAGAGGATTAGCTGTTTGATCGATGAT 351
Query 273 TTTGGATGGATGTTCGCACAACCCATTGCTCA-A----C--TC-CC-GAGATTAGTCGTC 323
| ||||||||| ||| |||| ||| ||||||| | | || || |||||| ||| |
Sbjct 352 TCTGGATGGATATTCACACAGCCCGTTGCTCAGAGTTTCAATCTCCCGAGATTGGTCCTT 411
Query 324 AGTGAGTTTACA--GTCTCCTTCTTTCGA-AGCCAATTTGTTCTTCCT-AAGCTCCGCCG 379
| | | ||| |||||||||||||| | ||| |||||||||||| || ||||| ||
Sbjct 412 AAC-ACCT-ACAAAGTCTCCTTCTTTCGGGA-CCATTTTGTTCTTCCTCAA-CTCCGTCG 467
Query 380 TGAAGTGTATCTTCCA 395
|||| |||||||||||
Sbjct 468 TGAAATGTATCTTCCA 483
> AT5G05880.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:1769648-1771515 FORWARD LENGTH=1356
Length=1356
Score = 115 bits (62), Expect = 8e-25
Identities = 86/96 (90%), Gaps = 7/96 (7%)
Strand=Plus/Plus
Query 1 TACAAGGCTGCATCAACCCCATGATTCAGCTCGCCAAGATCCTCCACTCAAGAGTCAAGA 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 47 TACAAGGCTGCATCAACCCTATGATTCAGCTCGCCAAGATCCTCCACTCAAGAG----GT 102
Query 61 GGTTTCTCAATCACTGTGATCCACACGTGCTTCAAC 96
||| |||||||||||||||||||| |||||||||
Sbjct 103 --TTT-TCAATCACTGTGATCCACACTTGCTTCAAC 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5