BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg940021 Length=617 Score E Sequences producing significant alignments: (Bits) Value AT5G05910.1 | Symbols: | RING/U-box superfamily protein | chr5... 477 5e-134 > AT5G05910.1 | Symbols: | RING/U-box superfamily protein | chr5:1776858-1777313 FORWARD LENGTH=456 Length=456 Score = 477 bits (258), Expect = 5e-134 Identities = 413/480 (86%), Gaps = 42/480 (9%) Strand=Plus/Plus Query 107 ATGCGATCTTTTCCGCCGTCACCATCCATCCCCCGCATAC-ATCGAAAACGATACGCATC 165 |||||||||||||||||||||||| | | ||||||| | ||||||||| ||||| | Sbjct 1 ATGCGATCTTTTCCGCCGTCACCA-GC-T--CCCGCAT-CTATCGAAAACAATACG---C 52 Query 166 ATCATCATCTACATGAAGACTTCACTCTTATGATCATCGTCTTCGTTTTGTATGGCATTG 225 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 53 ATCATCATCTACATGAAGACTTCACTCTTATGGTCATCGTCTTCGTTTTGTATGGCATTG 112 Query 226 TTGCCATAAGGTATGTAACCTTTAATGATGGTTCTCGTGGAACTAATCTTAGCTTCCAGA 285 ||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||| Sbjct 113 TTGCCATAAGGTATGCAACCTTTAACGATGGTTGTCGTGGAACTAATCTTAGATTCCAGA 172 Query 286 GACAGC-------T--ACCG---CCACTGC---AGCCGCCAATGTGTCCGCGGCAGATTG 330 ||| || | |||| |||| | |||||||||||||||||||| |||||| Sbjct 173 GACCGCAACCACCTCTACCGTTACCACAACCTCAGCCGCCAATGTGTCCGCGGGAGATTG 232 Query 331 AGGCGATGATTAAGGACATAGTTGTTGACGTGGAATTGTGTTGTCCAATATGTCTTGAGG 390 |||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 233 CGGCGATGATTAAAGACATAGTTGTGGACGTGGAATTATGTTGTCCGATATGTCTTGAGG 292 Query 391 ATTTGAAGAAGGTTGATGATGATAATGGCCGTGGCGATGATGATAAAGTCGTGGTTTGTT 450 ||||||||||||||||| | || | |||||||||||||||||||||||| Sbjct 293 ATTTGAAGAAGGTTGAT-A--AT---G---------ATGATGATAAAGTCGTGGTTTGTT 337 Query 451 TATCCAAGTGCCATCATAGTTTCCACATGAAGTGCATTTTTTCTTGGCTTAGACAAAGTC 510 ||||||||||| ||||||||||||||||||| ||||| || |||||||||||| |||||| Sbjct 338 TATCCAAGTGCAATCATAGTTTCCACATGAATTGCATATTCTCTTGGCTTAGAGAAAGTC 397 Query 511 AGGATTGTCCCATTTGTCGTACCTCTGTTTATC-GAGGTGAAGTTACATTGATCAA-TAA 568 ||||||||||||| ||||||| | ||||||| | |||||| ||||||||||||||| ||| Sbjct 398 AGGATTGTCCCATCTGTCGTAGCACTGTTTA-CAGAGGTGGAGTTACATTGATCAAATAA 456 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29738615024 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5