BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940021

Length=617
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05910.1 | Symbols:  | RING/U-box superfamily protein | chr5...   477    5e-134


> AT5G05910.1 | Symbols:  | RING/U-box superfamily protein | chr5:1776858-1777313 
FORWARD LENGTH=456
Length=456

 Score =  477 bits (258),  Expect = 5e-134
 Identities = 413/480 (86%), Gaps = 42/480 (9%)
 Strand=Plus/Plus

Query  107  ATGCGATCTTTTCCGCCGTCACCATCCATCCCCCGCATAC-ATCGAAAACGATACGCATC  165
            ||||||||||||||||||||||||  | |  ||||||| | ||||||||| |||||   |
Sbjct  1    ATGCGATCTTTTCCGCCGTCACCA-GC-T--CCCGCAT-CTATCGAAAACAATACG---C  52

Query  166  ATCATCATCTACATGAAGACTTCACTCTTATGATCATCGTCTTCGTTTTGTATGGCATTG  225
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  53   ATCATCATCTACATGAAGACTTCACTCTTATGGTCATCGTCTTCGTTTTGTATGGCATTG  112

Query  226  TTGCCATAAGGTATGTAACCTTTAATGATGGTTCTCGTGGAACTAATCTTAGCTTCCAGA  285
            ||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||
Sbjct  113  TTGCCATAAGGTATGCAACCTTTAACGATGGTTGTCGTGGAACTAATCTTAGATTCCAGA  172

Query  286  GACAGC-------T--ACCG---CCACTGC---AGCCGCCAATGTGTCCGCGGCAGATTG  330
            ||| ||       |  ||||   ||||  |   |||||||||||||||||||| ||||||
Sbjct  173  GACCGCAACCACCTCTACCGTTACCACAACCTCAGCCGCCAATGTGTCCGCGGGAGATTG  232

Query  331  AGGCGATGATTAAGGACATAGTTGTTGACGTGGAATTGTGTTGTCCAATATGTCTTGAGG  390
             |||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct  233  CGGCGATGATTAAAGACATAGTTGTGGACGTGGAATTATGTTGTCCGATATGTCTTGAGG  292

Query  391  ATTTGAAGAAGGTTGATGATGATAATGGCCGTGGCGATGATGATAAAGTCGTGGTTTGTT  450
            ||||||||||||||||| |  ||   |         ||||||||||||||||||||||||
Sbjct  293  ATTTGAAGAAGGTTGAT-A--AT---G---------ATGATGATAAAGTCGTGGTTTGTT  337

Query  451  TATCCAAGTGCCATCATAGTTTCCACATGAAGTGCATTTTTTCTTGGCTTAGACAAAGTC  510
            ||||||||||| ||||||||||||||||||| ||||| || |||||||||||| ||||||
Sbjct  338  TATCCAAGTGCAATCATAGTTTCCACATGAATTGCATATTCTCTTGGCTTAGAGAAAGTC  397

Query  511  AGGATTGTCCCATTTGTCGTACCTCTGTTTATC-GAGGTGAAGTTACATTGATCAA-TAA  568
            ||||||||||||| ||||||| | ||||||| | |||||| ||||||||||||||| |||
Sbjct  398  AGGATTGTCCCATCTGTCGTAGCACTGTTTA-CAGAGGTGGAGTTACATTGATCAAATAA  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29738615024


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5