BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940033
Length=371
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 475 1e-133
> AT5G06010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G41761.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1809940-1810263
FORWARD LENGTH=324
Length=324
Score = 475 bits (257), Expect = 1e-133
Identities = 306/329 (93%), Gaps = 6/329 (2%)
Strand=Plus/Plus
Query 21 ATGGGAAACAAGGATTCGAAAGGCTCTTCTTCTACAACCAATCCGAAAGGGGAGATTGCT 80
|||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1 ATGGGAAACAAGGACTCGAAAGGCTCTTCTTCTTCAACCAATCCGAAAGAGGAGATTGCT 60
Query 81 GCTGCATCTCAGCCTCAACTGCAACCACAGTCACCGCTATTGATCCGAAAATCGCAACCA 140
|||| | ||||||||||| || ||| |||||| ||||||||||||||||||||||
Sbjct 61 GCTGTACCTCAGCCTCAA---CAGTCAC---CACCGCAATTGATCCGAAAATCGCAACCA 114
Query 141 CAGCAACCATTACCACCACCCTCATCTGAGATGCCTCTTCTCTATCCTTGTTACAAAAAA 200
||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 115 CAGCAGCCATTACCACCACCTTCGTCTGAGATGCCTCTTCTCTATCCGTGTTACAAAAAA 174
Query 201 GAAGACTATGAGAAAATGAGCGAAGAGACAATCGATATGCTCCTAGCCACTTACGGAATC 260
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 175 GAAGACTATGAGAAAATGAGCGAAGAGACAATCGATATGCTCTTAGCGACTTACGGAATC 234
Query 261 ATGACAGTCCCTGGCGATTTGGCTAACAAGAGAAACTTTGCTTTTGAAACCTTTCGTTGG 320
|||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 235 ATGACAGTCCCTGGCGATTTAGCTGACAAGAGAAAGTTTGCTTTTGAAACCTTTCGTTGG 294
Query 321 GATCATAAGAACAATCACCCCAAAGCTTA 349
|||||||||||||||||||||||||||||
Sbjct 295 GATCATAAGAACAATCACCCCAAAGCTTA 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17442908903
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5