BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940041
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06110.1 | Symbols: | DnaJ domain ;Myb-like DNA-binding dom... 1134 0.0
AT3G11450.1 | Symbols: | DnaJ domain ;Myb-like DNA-binding dom... 542 5e-153
> AT5G06110.1 | Symbols: | DnaJ domain ;Myb-like DNA-binding domain
| chr5:1840830-1843872 REVERSE LENGTH=2479
Length=2479
Score = 1134 bits (614), Expect = 0.0
Identities = 738/796 (93%), Gaps = 15/796 (2%)
Strand=Plus/Plus
Query 691 CAGCTATTgaagaagagaaaaggcggaaagaagaagaagCAAAACGTGCAGCAGAGGCTG 750
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1294 CAGCTATTGAAGAAGAGAAAAGGCGAAAAGAAGAAGAAGCAAAACGTGCGGCAGAGGCTG 1353
Query 751 CTCTGCTGCACAAGAGAGCCAAGGAAAAAGAGAAGAAGCTTCTGCGCAAAGAACGAAGTA 810
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1354 CTCAGCTGCACAAGAGAGCCAAGGAAAGAGAGAAGAAGCTTCTGCGCAAAGAACGAAGTC 1413
Query 811 GGCTCAGAATTCTATCCGCACCTGTTCTGTCCCAGCGTCTGCTTAGCATCTCTGATGAAC 870
|||||||| |||| ||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 1414 GGCTCAGAGTTCTCTCCGCCCCTGTTCTGTCCCAGCGTCTGCTTGGCATATCTGATGAAC 1473
Query 871 ATGTGGAAGATCTATGTATGTCACTTAACACCGAGCAGTTGCGGAAACTGTGTGACAAGA 930
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 ATGTGGAAGATCTATGCATGTCACTTAACACCGAGCAGTTGCGGAAACTGTGTGACAAGA 1533
Query 931 TGGAAAACAAGGAA-GGACTGGCTTTGGCAAAGGTGATCAAGAATGGGAACAGCATTGAT 989
|||||||||||||| ||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1534 TGGAAAACAAGGAAGGGA-TGGCTTTGGCAAAGGTGATCAAGAATGGGAGCAACATTGAT 1592
Query 990 GATGATGATGAAATAGAGATTAaagaag-agaaagaagaagaagaagTTCAAGTAG-CT- 1046
|||||| | ||||||||||| |||||| || ||| ||| || ||| ||| || |
Sbjct 1593 GATGAT-A--AAATAGAGATTGAAGAAGAAG-AAGTTCAAGTAGCTGTT-AAGCAGAATG 1647
Query 1047 GT--TA-AGCAG--AATGGTCATATAGAAGCCAATGGTCATGTAGAAGCCAAAGTAGATA 1101
|| || || || ||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1648 GTCATATAGAAGCCAATGGTCATGTAGAAGCCAATGGTCATGTAGAAGCCAAAGTGGATA 1707
Query 1102 CTGCTACTCATCAGAAGAAAGAGAAACCTTGGAGCAAGGAAGAGATTGACATGCTGAGAA 1161
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 CTGCTACTCATGAGAAGAAAGAGAAACCTTGGAGCAAGGAAGAGATTGACATGCTGAGAA 1767
Query 1162 AAGGAACAACTAAGTTCCCAAAAGGAACATCTCAAAGATGGGAAGTCATATCAGAGTACA 1221
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1768 AAGGAACAACCAAGTTCCCAAAAGGAACATCTCAGAGATGGGAAGTCATATCAGAGTACA 1827
Query 1222 TTGGTACAGGAAGATCTGTGGAGGAAATTCTCAAGGCTACCAAAACAGTACTTCTCCAGA 1281
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1828 TTGGTACAGGAAGATCTGTGGAGGAAATTCTCAAGGCTACTAAAACAGTACTTCTCCAGA 1887
Query 1282 AACCTGACTCAGCTAAAGCATTTGATTCTTTTCTGGAGAAGAGGAAACCTGCTGCTTCAA 1341
|||| |||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1888 AACCCGACTCAGCTAAAGCTTTTGACTCTTTTCTGGAGAATAGGAAACCTGCCGCTTCAA 1947
Query 1342 TCGCCTCTCCTCTCTCTACACGAGAGGAACTCGGAGAACCAATTATACCGATCAAACCTC 1401
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1948 TCAACTCTCCTCTCTCTACACGAGAGGAACTCGGAGAACCAATTATACCGACCAAAGCTC 2007
Query 1402 ATGAAGAAAACAACTCAGCCAAAACAGAGACCGCagaacagaacggtaagagcgaagaga 1461
||||||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2008 ATGAAGACAACAACTCAACCAAAACAGAGACCGCAGAACAGAACGGTAAGACCAAAGAGA 2067
Query 1462 acaacaacagcaacgg 1477
|||||||||| |||||
Sbjct 2068 ACAACAACAGTAACGG 2083
Score = 1099 bits (595), Expect = 0.0
Identities = 658/689 (96%), Gaps = 2/689 (0%)
Strand=Plus/Plus
Query 1 GCTCTGACACATATTTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGCTACTTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GCTCTGACACATATTTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGCTACTTA 348
Query 61 CGTACTCCAGTGAGCTCAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTG 120
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CATACTCCAGTGAGCTTAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTG 408
Query 121 TTAAGGCCGTAAACCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGC 180
| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 409 TGAAGGCTTTAAACCGTGAACCTGCGGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGC 468
Query 181 GTGGGTGTACAAAGGAAGCCACAAGCAAGAATGAAGATACCGATAAGAAAGTCCCAAAGG 240
|||| ||| | |||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 469 GTGGTTGTGCTAAGGAAGCCACAAGCAAGAACGAAGATACCGATAAGAAGGTCCCTAAGG 528
Query 241 AGAAGGATAGTGAATATATTCCTTCCTATGACTCGCATAACATCAAAGGAAAGAAGAAGT 300
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 529 AGAAGGATGGTGAATATATTCCTTCCTATGACTCCCATAACATCAAAGGAAAGAAGAAGT 588
Query 301 CGGGGAAGCAACAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTG 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CGGGGAAGCTACAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTG 648
Query 361 CAACAGAGGATCAGATCAGAAAAAGCTATCGCGAAGCTGCACTGAAACATCACCCTGATA 420
||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 649 CAACAGATGATCAGATCAGAAAAAGTTATCGCGATGCTGCACTGAAGCATCACCCTGATA 708
Query 421 AACTTGCTACTCTACTTCTTGCT-GAAGAGACAGAAGAAGCAAAACAAGCCAAGAAGGAT 479
|||| ||||||||||||||| || || |||||||||||||||||||||||||| ||||||
Sbjct 709 AACTGGCTACTCTACTTCTT-CTTGAGGAGACAGAAGAAGCAAAACAAGCCAAAAAGGAT 767
Query 480 GAGATAGAATCTCACTTCAAGTTGATTCAAGAAGCATATGAGGTTTTGATGGACCCTACA 539
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 768 GAGATAGAATCTCACTTCAAGTTGATTCAAGAAGCTTATGAGGTTTTGATGGACTCAACA 827
Query 540 AAAAGAAGAATATTTGACTCTACGGATGAGTTTGATGACAAAGTCCCAACTGATTGTGCT 599
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 828 AAAAGAAGAATATTTGACTCTACAGATGAGTTTGATGACAAAGTCCCAACTGATTGTGCT 887
Query 600 CCGCAAGACTTCTTCAAGGTTTTTGGTCCAGCTTTTAAGAGAAACGCAAGGTGGTCGAAT 659
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 888 CCCCAAGACTTCTTCAAGGTTTTTGGTCCAGCATTTAAGAGAAACGCAAGGTGGTCAAAT 947
Query 660 TCGCCTTTACCAGATTTGGGAGATGAAAA 688
|||||||||||||||||||||||||||||
Sbjct 948 TCGCCTTTACCAGATTTGGGAGATGAAAA 976
Score = 390 bits (211), Expect = 2e-107
Identities = 258/280 (92%), Gaps = 5/280 (2%)
Strand=Plus/Plus
Query 1467 aacagcaacggtaagagcgaagagaacaacaacaGCAATGGCATCTCTGAACCAGATA-C 1525
||||| |||||||||| | |||||||||||||||| || |||| ||||||||||| | |
Sbjct 2044 AACAG-AACGGTAAGACCAAAGAGAACAACAACAGTAACGGCAACTCTGAACCAG-CAGC 2101
Query 1526 TGC-TGCTGGTTCAGACCCAGACGGTTGGTCTGCTGTGCAAGAAAGAGCACTGGTACAGG 1584
|| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2102 AGCAT-CTGGTTCAGACCCAGACGGTTGGTCTGCTGTGCAAGAAAGAGCTCTGGTACAGG 2160
Query 1585 CTTTGAAGACCTTCCCAAAGGAGACAAACCAAAGATGGGAGAGAGTAGCAACAGCTGTTC 1644
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 CTTTGAAGACGTTCCCAAAGGAGACAAACCAAAGATGGGAGAGAGTAGCAACAGCTGTTC 2220
Query 1645 CAGGGAAAACGTTGAACCAATGCAAGAAGAAGTTTGCTGAGCTTAAGGACATCATCAGAA 1704
||||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 2221 CAGGGAAAACGATGAATCAATGCAAGAAGAAGTTTGCTGATCTTAAGGACGTCATCAGAA 2280
Query 1705 CCAAGAAACCCACAGCCTAACTTATCAGAGCCCTCGAGCT 1744
||||||||||||||||||||| |||| || |||||||||
Sbjct 2281 CCAAGAAACCCACAGCCTAACCTATCCGATTCCTCGAGCT 2320
> AT3G11450.1 | Symbols: | DnaJ domain ;Myb-like DNA-binding domain
| chr3:3605217-3608086 REVERSE LENGTH=2432
Length=2432
Score = 542 bits (293), Expect = 5e-153
Identities = 560/687 (82%), Gaps = 26/687 (4%)
Strand=Plus/Plus
Query 15 TTCATCATGCAGAGTTGGGGAATTAACTCTGCTATTAAGCTACTTACGTACTC-CAGTGA 73
|||||||||| ||| || ||| | | |||||||||| |||| |||||||||| || ||
Sbjct 241 TTCATCATGCCGAGCCGGAGAAGTGAGTCTGCTATTAGGCTAATTACGTACTCTGAG-GA 299
Query 74 GCTCAAGGATGGACAAGCGCTCTATGCTTCTTCCAATTGTCATCCTGTTAAGGCCGTAAA 133
||| ||||||| || || ||| ||||| ||||||||||| |||||| ||||| ||||
Sbjct 300 GCTTGTGGATGGAAAACCGTTCTTTGCTTTTTCCAATTGTCTTCCTGTGAAGGCTTTAAA 359
Query 134 CCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCTCTCAAACTGCGTGGGTGTACA-A 192
|||||||||||||||||||||||||||||||||||| || ||||||| ||| ||| || |
Sbjct 360 CCGTGAACCTGCTGGTCATGCCTTCCATTCTGCTGCGCTTAAACTGCATGGTTGTGCAGA 419
Query 193 AGGAAGCCACAAGCAAGAATGAAGATACCGATAAGAAAGTCCCAAAGGAGAAGGATA-GT 251
|| || ||||| | | || ||||| | ||||||||||| | | || || || | |
Sbjct 420 AG-AACCCACA-G-ACGA-TGAAGGTGGTGATAAGAAAGTGGGAGATGATAAAGAGAAG- 474
Query 252 GAATATATTCCTTCCTATGA-CTCGCATAACATCAAAGGAAAGAAGAAGTCGGGGAAGCA 310
|||||| ||||||| | | | |||| || || |||||||||||||||||| || | ||
Sbjct 475 GAATATGTTCCTTCAT-TCAACTCGTATGCCAACAAAGGAAAGAAGAAGTCTGGTACCCA 533
Query 311 ACAACATGATCACTATGCGTTGTTGGGTTTGGGCAATTTAAGATATCTTGCAACAGAGGA 370
||||| || ||||||||||||||||||||| ||||| ||||||||||||| || || ||
Sbjct 534 GCAACAAGACCACTATGCGTTGTTGGGTTTGAGCAATCTAAGATATCTTGCGACGGAAGA 593
Query 371 TCAGATCAGAAAAAGCTATCGCGAAGCTGCACTGAAACATCACCCTGATAAACTTGCTAC 430
|||||| || ||||| ||||| ||||||||| |||| ||||| ||||||||||| ||||
Sbjct 594 TCAGATTAGGAAAAGTTATCGTGAAGCTGCATTGAAGCATCATCCTGATAAACTCGCTAG 653
Query 431 TCTACTTCTTGCT-GAAGAGACAGAAGAAGCAAAACAAGCCAAGAAGGATGAGATAGAAT 489
||| ||||| | | || || ||||||||||| || | || || || |||||||| ||||
Sbjct 654 TCTCCTTCT-GTTAGAGGAAACAGAAGAAGCCAAGGAGGCAAAAAAAGATGAGATTGAAT 712
Query 490 CTCACTTCAA-GTTGATTCAAGAAGCATATGAGGTTTTGATGGACCCTACAAAAAGAAGA 548
||| |||||| | ||||||||||||||||||||| ||||||||||| || | ||||||
Sbjct 713 CTCGCTTCAAAGC-GATTCAAGAAGCATATGAGGTATTGATGGACCCAACTAGGAGAAGA 771
Query 549 ATATTTGACTCTACGGATGAGTTTGATGACAAAGTCCCAACTGATTG-T-GCTCCGCAAG 606
|| |||||||| || ||||||||||||||| | |||||| | ||||| | || | |||||
Sbjct 772 ATTTTTGACTCCACTGATGAGTTTGATGACGAGGTCCCATCGGATTGCTTGC-C-GCAAG 829
Query 607 ACTTCTTCAAGGTTTTTGGTCCAGCTTTTAAGAGAAACGCAAGGTGGTC-G--AATTC-G 662
|||| |||||||| ||||||||||| ||||||||||| || |||||||| | ||| | |
Sbjct 830 ACTTTTTCAAGGTGTTTGGTCCAGCGTTTAAGAGAAATGCTAGGTGGTCAGTGAAT-CAG 888
Query 663 CCT-TTACCAGATTTGGGAGATGAAAA 688
| | || ||||||||||||||||||||
Sbjct 889 CGTATT-CCAGATTTGGGAGATGAAAA 914
Score = 259 bits (140), Expect = 6e-68
Identities = 224/264 (85%), Gaps = 7/264 (3%)
Strand=Plus/Plus
Query 1120 AAGAGA-AACCTTGGAGCAAGGAAGAGATTGACATGCTGAGAAAAGGAACAACT-AAGT- 1176
|||| | |||| |||||||||||||||||||| |||||||||||||||| | | || |
Sbjct 1630 AAGAAACAACCATGGAGCAAGGAAGAGATTGATATGCTGAGAAAAGGAATGA-TAAAATA 1688
Query 1177 TCCCAAAAGGAACATCTCAAAGATGGGAAGTCATATCAGAGTACATTGGTACAGGAAGAT 1236
| ||||| || ||||| | ||||||||||| || |||||||||||||||||||||||||
Sbjct 1689 T-CCAAAGGGGACATCGCGGAGATGGGAAGTTATTTCAGAGTACATTGGTACAGGAAGAT 1747
Query 1237 CTGTGGAGGAAATTCTCAAGGCTACCAAAACAGTACTTCTCCAGAAACCTGACTCAGCTA 1296
|||| ||||||||||| || || || |||||||| || || || ||||| || |||||||
Sbjct 1748 CTGTAGAGGAAATTCTGAAAGCAACTAAAACAGTTCTCCTGCAAAAACCAGATTCAGCTA 1807
Query 1297 AAGCATTTGATTCTTTTCTGGAGAAGAGGAAACC-TGCTGCTTCAATCGCCTCTCCTCTC 1355
||||||| |||||||| || |||||||||||||| | ||||||||||| | || ||||||
Sbjct 1808 AAGCATTCGATTCTTTCCTCGAGAAGAGGAAACCCT-CTGCTTCAATCACATCCCCTCTC 1866
Query 1356 TCTACACGAGAGGAACTCGGAGAA 1379
|| ||| ||||||| |||||||||
Sbjct 1867 TCCACAAGAGAGGAGCTCGGAGAA 1890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5