BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg940050

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G56090.1 | Symbols: ATFER3, FER3 | ferritin 3 | chr3:2081404...   115    3e-25


> AT3G56090.1 | Symbols: ATFER3, FER3 | ferritin 3 | chr3:20814047-20816035 
REVERSE LENGTH=1134
Length=1134

 Score =  115 bits (62),  Expect = 3e-25
 Identities = 69/72 (96%), Gaps = 1/72 (1%)
 Strand=Plus/Plus

Query  73   CAGGTGGAAGCGACTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAA  132
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  721  CAGGTGGAAGCCATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAA  780

Query  133  GGACATGGTAAC  144
            |||||||| |||
Sbjct  781  GGACATGG-AAC  791



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18196925138


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5