BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940051
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06180.1 | Symbols: | Protein of unknown function (DUF1022)... 1897 0.0
> AT5G06180.1 | Symbols: | Protein of unknown function (DUF1022)
| chr5:1873162-1875623 FORWARD LENGTH=1521
Length=1521
Score = 1897 bits (1027), Expect = 0.0
Identities = 1176/1250 (94%), Gaps = 2/1250 (0%)
Strand=Plus/Plus
Query 10 TTTCAACTCTAATGCGGCGAACACGGCCACCGGAACTGGCAGTCACCGGTTTATCAGAGA 69
||||| |||||||||| ||||||| ||||| ||||||||| ||||| |||||||| ||||
Sbjct 25 TTTCACCTCTAATGCGACGAACACAGCCACGGGAACTGGCCGTCACTGGTTTATCGGAGA 84
Query 70 ATCTCCAAGGA-GATATTTACCGCACGGTGAAACGAGCTGTTGTAATCGGAAACGGCTGC 128
||||||||||| | | ||| |||||||||||||||||| ||| | |||||||||||||||
Sbjct 85 ATCTCCAAGGATG-TGTTTTCCGCACGGTGAAACGAGCAGTTCTGATCGGAAACGGCTGC 143
Query 129 GCCGGCGCGGAGAATCAGTGCATCGGTCTTGTTCGCTCCTTAGGCCTCTTCGATCGCCAC 188
||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 144 GCCGGCGCGGAGAATCAATGCATCGGTCTCCTTCGATCCTTAGGCCTCTTCGATCGCCAC 203
Query 189 CTCTATTATAGAGTGGCTAGACCAAAAGGTGGAATCCTTCAATGGCTTCCTATCTCTCTC 248
|||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 204 CTCTATTATAGAGTAGCTAAACCAAGAGGTGGAATCCTTCAATGGCTTCCTATCTCTCTC 263
Query 249 TACAAACGAATTCATCGTTTTATCAGCACTATCTGTGCCAGATTCTCCATTAACGCTACT 308
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 264 TACAAACGAATTCATCGTTTTATCAGCACTATCTGTGCCGGATTATCCATTAACGCTACT 323
Query 309 GGAATCACCAATGTGTTTGAGGTTGATGATGCGAAGCAGATTGCTGCTATGGCTCGTAGT 368
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 324 GGAATCACGAATGTGTTTGAAGTAGATGATGCGAAGCAGATTGCTGCTATGGCTCGTAAA 383
Query 369 ACGTTTGACAAGAATGGCCCGTTGTTAGTGGTGGCATCTGGTAGTGATACCATTTCCGTC 428
|||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 384 ACGTTTGAAAAGAATGGCCCGTTGTTAGTCGTGGCGTCTGGTAGTGATACTATTTCCGTC 443
Query 429 GCAAGCTCCATAAGACGACTAGCTAGGGAAAATGTTTTTGTTGTTCAGGTGCAACATCCA 488
|||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 444 GCAAGCTCAATAAGACGACTGGCTATGGAAAATGTTTTTGTTGTTCAGGTGCAACATCCA 503
Query 489 AGGTCGCATCTCGATAGATTTGATCTAGTGCTCACACCTCGTCATGATTATTTTTCTTTA 548
||||||||||| || ||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 504 AGGTCGCATCTTGAGAGATTTGATCTAGTGATCACACCTCAACACGATTATTTTTCTTTA 563
Query 549 ACACCTGAAGGGAAGATGCAAATTCCTTTCTTTCTCCGACCATGGGTAACTCCACGTGAA 608
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 564 ACACCTGAAGGGAAGAGGCAAATTCCTTTCTTTCTCAGACCATGGGTAACTCCACGTGAA 623
Query 609 CCTCCAGGTAGAAATGTGTTTCTCACCACTGGAGCTCTTCATTACGCCGATGCTTCTACT 668
| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 624 CATCCAGGTAGAAATGTGTTTCTCACTACTGGAGCTCTTCATTACGCCGACGCTTCTACT 683
Query 669 CTGAGAAATGCTACTTTGGAATGGAAGGAGGAGTTTTCTTCGCTGTCAAAGCCTTTAGTT 728
|| ||||||||||| | ||||||||| | |||||| |||||||| |||||||||| |||
Sbjct 684 CTAAGAAATGCTACATCGGAATGGAAAAACGAGTTTGCTTCGCTGCCAAAGCCTTTGGTT 743
Query 729 GTAGTTAATATTGGAGGACCTACAAGGAACTGTTTGTATGGTGTTGATCTTGCTAAACAG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GTAGTTAATATTGGAGGACCTACAAGGAACTGTTTGTATGGTGTTGATCTTGCTAAACAG 803
Query 789 TTGTGTGGTATGCTTCAGAGTATCCTCTGGAGCTGTGGAAGCCTAAGAATATCTTTCTCA 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TTGTGTGGTATGCTTCAGAGTATCCTCTGGAGCTGTGGAAGCCTAAGAATATCTTTCTCA 863
Query 849 AGAAGAACACCGAAGAAGGTTGTAGAAATCATAACTGGAGAATTGAGCTCTAACTCTAAG 908
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 864 AGAAGAACACCAAAGAAGGTTGTAGAAGTCATAACTGGAGAATTGAGCTCTAACTCTAAG 923
Query 909 GTCTACATTTGGGATGGAAAAGACCCTAATCCGCATTTGGGACATCTAGCTTTAGCCGAT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 924 GTCTACATTTGGGATGGAAAAGACCCTAATCCGCATTTGGGACATCTAGCTTTAGCCAAT 983
Query 969 ACTTTTATCATAACTGCGGACTCTATAAGTATGCTGAGCGAGGCATGTAGTACCGGGAAA 1028
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 984 ACTTTTATCATAACTGCTGACTCTATAAGTATGTTGAGCGAGGCATGTAGTACCGGGAAA 1043
Query 1029 CCTGTTTATGTTGTGGGTGCTGAACGGTGTACATGGAAATTTTCTGACTTCCAGAAGACT 1088
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CCCGTTTATGTTGTGGGTGCTGAACGGTGTACATGGAAATTTTCTGACTTCCAGAAGACT 1103
Query 1089 CTCCATGAAAGAGGAGCTGTTCGACCTTTGACTGGCAATGAAGATATGTGCGAGAAGTGG 1148
||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1104 CTCCATGGTAGAGGAGCTGTTCGACCTTTGACCGGCAAAGAAGATATGTGTGAGAAGTGG 1163
Query 1149 AGTTACTCTCCGCTTAGCGATAATGAAGAAGCTGCGAGGCGTGTGATTCAAGATCTGGCC 1208
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1164 AGTTACTCTCCTCTTAACGATAATGTAGAAGCTGCGAGGCGTGTGATTCAAGATCTGGCC 1223
Query 1209 AAGCGTGGCTGGAAAATTGAGACATGACCGTGCTTTCCCTCCCCAAGTTT 1258
|||||||||||| |||| ||| ||||||||| |||||||||| |||||||
Sbjct 1224 AAGCGTGGCTGGGAAATCGAGGCATGACCGTTCTTTCCCTCCACAAGTTT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5