BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg940072
Length=439
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 241 5e-63
> AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr5:1934739-1935644
REVERSE LENGTH=906
Length=906
Score = 241 bits (130), Expect = 5e-63
Identities = 226/271 (83%), Gaps = 11/271 (4%)
Strand=Plus/Plus
Query 2 GATCACTTCTG-CGACTGCCATGCCTACGACTTATCAAGGACATAAAGAAGT---TTTTT 57
|||||||| || ||| | |||||| ||| |||||||||||||| |||||||| |||
Sbjct 369 GATCACTT-TGCCGAGTCCCATGCTTACCACTTATCAAGGACACAAAGAAGTCAACGTTT 427
Query 58 GGTCTCCTTACGTCGGGGGAAACTCCGTTCCCGTCGCTCCGTCCAACGCCGTGAATCTCG 117
||||||||| |||||| ||| |||||||||| || ||||||| |||||| | ||||||
Sbjct 428 GGTCTCCTTTCGTCGGTGGATACTCCGTTCCTGTGGCTCCGTACAACGCTTTCTATCTCG 487
Query 118 AGCAGGTCCATTCACTTGGCGCGATCAAT-TTGATGCTTCATCTTGACGG-CAAAGTTCG 175
| |||| ||||||| |||||||||| || |||||||||||||| ||||| | ||||||
Sbjct 488 ATCAGGACCATTCAAGTGGCGCGATC-ATGTTGATGCTTCATCTCGACGGTC-GAGTTCG 545
Query 176 TTGGAAAGTCGGTA-CCTTCATCACCGGAAAATATCATCTCCATGTTAGATGCCCGGCGT 234
|||||||||||| | |||||||||||||||||||||||||||| |||||||| | |||
Sbjct 546 TTGGAAAGTCGG-ATCCTTCATCACCGGAAAATATCATCTCCACGTTAGATGTCATGCGC 604
Query 235 TTATCAACTTTTGTAATTGTTCTGCCGGAGT 265
|||||||||| | | | || ||||||||||
Sbjct 605 TTATCAACTTCGGGAGTAGTGCTGCCGGAGT 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20861115835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5